« Back to Amborella trichopoda search


Detailed information on CNT0021761


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 9e-11 (V. vinifera)
CNT0042615, E-value = 2e-15 (A. thaliana)
CNT0033040, E-value = 2e-15 (P. patens)
CNT0018900, E-value = 3e-17 (Z. mays)
CNT0002871, E-value = 4e-16 (G. max)
CNT0031007, E-value = 4e-16 (O. sativa)
CNT0008668, E-value = 4e-10 (S. tuberosum)
CNT0040165, E-value = 6e-12 (S. moellendorffii)

Expression of CNT0021761

ERR364329: 30.028 RPKM

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MECKWCSSSSKRKRKIGKSKEKEKEWQSWPLTHQKLMRRKSMEELVLLGEHGSCYMQEERCMQLS*

>peptide 2 (71 aa)
MSLMFYGVATLYARIVFLAYNGLSSSFPICPCSSPFSSPARGVNYYHFASFGRVLSNSLEKISSYFGWLKA*

>peptide 3 (262 aa)
MWSLASSAISGTLGLKAHQPHHHTLNPNSECSDDDASSSSSSREEGLECPVCWESFNIVENVPYVLWCGHTLCKNCVLGLQWAVIKFPNLPLQLPLFISC
PWCQLLSFRLVWKGTLKFPRKNFFLLWMVESMNGDRTKSHTALCGDQTGWPTPVVSHVRRALNSRVEQNPNPNPNAGHRHPNLLNVERLNSSLRKSLVFF
VHLTAKFPLVLILLLIIVYVIPASAIILALYVLVTVLFALPSFLILYFAYPSLDWLVREIVT*

>peptide 4 (32 aa)
MPRESTSNDALGSQENVKLELWPLFIGYRLPT*

>peptide 5 (63 aa)
MVWPHSMQELCSWLTMGCHQVSQFAPAAPPFHLLPVVSITIISPRLEGYSQIPSKKFLLTLDG*

>peptide 6 (29 aa)
MVIEQNPILPSVGTKQGGPPQLCPMSGGL*

Sequence

>CNT0021761
CTCTCTCTCTCTCTCTCTAAATAAATAAGAAGGGTGTCGTGGTCAGATCTCTCACCGTATATTAACCACTCCGATATTCCAGTTGCAAGTTCTTGAATCT
CTCTTTCTCTCTGTATCAGGGATTCTATGGGAATGGAGGGCCATGGTGCAGGCACCCTCATCCTGCATCTAGCCTGCAACTCCAAACCATAACCCTAACT
CCAATCCTAGTATCTCTCAAGGTTTGTAACTGTTCACAGCAACAGAGATCGTTGCAGCATCTAATGCCAAGGGAATCCACATCCAATGATGCTCTTGGAT
CACAAGAAAACGTGAAGCTTGAGCTATGGCCTCTATTCATTGGTTATCGATTGCCCACTTAATAGACCCATTTGAGCTCTTTGATTCAGCCAATAACTAT
GTGGTTTGATCGCTGATTAGCCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTGGTTGAGTTGTCGGGGTTAGAACAAGTAAC
CATGTGGAGCTTAGCTTCGAGTGCTATATCAGGAACCTTAGGGCTAAAGGCCCATCAACCCCACCACCACACTCTGAACCCTAATTCTGAATGCTCAGAT
GATGATGCTTCCTCTTCGAGCTCAAGCAGGGAGGAAGGACTCGAGTGCCCTGTTTGTTGGGAGTCTTTCAACATAGTTGAGAATGTCCCTTATGTTCTAT
GGTGTGGCCACACTCTATGCAAGAATTGTGTTCTTGGCTTACAATGGGCTGTCATCAAGTTTCCCAATTTGCCCCTGCAGCTCCCCCTTTTCATCTCCTG
CCCGTGGTGTCAATTACTATCATTTCGCCTCGTTTGGAAGGGTACTCTCAAATTCCCTCGAAAAAATTTCTTCTTACTTTGGATGGTTGAAAGCATGAAT
GGTGATCGAACAAAATCCCATACTGCCCTCTGTGGGGACCAAACAGGGTGGCCCACCCCAGTTGTGTCCCATGTCCGGCGGGCTCTGAACTCTCGTGTCG
AGCAAAATCCTAACCCTAACCCAAACGCTGGTCACCGGCACCCTAATCTTCTCAACGTCGAGAGGCTGAACTCTTCTTTGAGGAAATCACTGGTTTTCTT
CGTACACTTGACTGCTAAGTTTCCCTTGGTCCTCATATTGCTTCTCATCATAGTGTATGTGATTCCGGCTAGTGCAATTATCTTGGCTCTCTATGTTCTC
GTGACTGTCTTGTTTGCCTTGCCATCTTTCCTTATATTATATTTTGCATACCCAAGTTTGGATTGGCTGGTCAGAGAGATAGTCACTTGAGCAATGGTGG
CCTTCTTCGAACCCTATTGACTGTTTTGTCCCTCTGCAAAATTGGTTGATATGGAGTGATTTGCCGACTTGCCTGCCTTTCTGAGGGTCTCATTTTGGAG
ACAGAAAACTCGGGTAGCTTCTCTCAACAACCTGTTTGGGGTTTTGTCATAATTAATGAGAAAGAACTGTGGTCGTATCCTCTCTCTACATGTTTTTGGG
TTCGTTTACCTGTTTGTCACCGAATGGTGATGTTTTAATGCTTTGAAGATGGTGGGAGTTATCATGGATTTTGTTGCATGGAATGTAAGTGGTGCTCTTC
CTCATCAAAAAGGAAAAGAAAAATAGGGAAAAGTAAAGAGAAAGAAAAAGAATGGCAGAGCTGGCCCCTTACTCATCAAAAACTGATGAGGAGAAAAAGC
ATGGAAGAGCTGGTTCTTTTGGGTGAGCATGGATCTTGTTATATGCAGGAAGAGAGATGCATGCAACTAAGTTAAGGGTTTTTGTTTATTTGTGACTTTT
TAGGGTTTTGGTTCTTTGGTGACTGTTGTGTGTTTTGAGACTCTGTAGTTCCAAGCTTTTGTTCATGGCTTGTTGATTATGTGTGGTTTTACGCTTCGTT
ATGGTCTTGTACATGGGCTTTGGCTATTTCTTCCTATTTTTATATGAGGTCCATCCGTCCCTCATGATTTTCTCCTTTA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ERN19834 hypothetical protein protein coding CNT0021761 110 54 CDS Trans