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Detailed information on CNT0021851


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O23685|AP1S2_ARATH, E-value = 6e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 2e-12 (V. vinifera)
CNT0043075, E-value = 2e-12 (A. thaliana)
CNT0034678, E-value = 8e-12 (P. patens)
CNT0021107, E-value = 5e-07 (Z. mays)
CNT0002061, E-value = 3e-08 (G. max)
CNT0030844, E-value = 5e-13 (O. sativa)
CNT0007969, E-value = 8e-12 (S. tuberosum)
CNT0038582, E-value = 8e-12 (S. moellendorffii)

Expression of CNT0021851

ERR364329: 7.536 RPKM

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PLSLSLSLSLSLCLCVYDISVRIRHIESETFSLITEKRSIFPKENCGRQMFLICLFVFV*

>peptide 2 (31 aa)
MIHFVLLISRQGKVRLTKWYSPYSQKERTKD*

>peptide 3 (51 aa)
MVFSLLPEGTNQGLKSLCPWLKFWKSLPRCFWSFWKLWSRSFTSLYFVYAR*

>peptide 4 (115 aa)
MPMVEILEIVAKMFLVILEVVEQIFYIIIFCLCKVIRELSGVILMRGPKLCNFVEWRGFKVIYKRYASLYFCMCIDADDNELEILEIIHHFVEILDRYFG
SVSIFLCLLNCIPLC*

Sequence

>CNT0021851
CTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTGTGTGTGTATGATATATCGGTGAGGATTCGGCACATCGAGAGTGAGACTTTTTCTCT
TATAACAGAGAAAAGATCCATATTTCCAAAAGAAAATTGTGGAAGACAAATGTTTTTAATTTGTTTATTTGTCTTTGTTTGAATGATTTGCAGGTTTTGA
TTGATTCCCACTATTTGTGATCAGGGCATAGAAAGAGAAATGATTCACTTTGTGCTTCTTATAAGTCGACAAGGCAAGGTGAGGCTGACAAAATGGTATT
CTCCTTACTCCCAGAAGGAACGAACCAAGGATTGAAGAGCCTATGCCCATGGTTGAAATTCTGGAAATCGTTGCCAAGATGTTTTTGGTCATTTTGGAAG
TTGTGGAGCAGATCTTTTACATCATTATATTTTGTCTATGCAAGGTGATTCGAGAGCTTAGCGGAGTGATTCTTATGCGTGGCCCCAAACTCTGTAATTT
TGTTGAGTGGAGGGGATTCAAGGTCATATATAAGAGATATGCTAGTCTTTACTTCTGCATGTGCATAGATGCTGATGACAATGAACTGGAGATTCTCGAA
ATAATTCACCATTTTGTTGAAATACTCGACCGTTACTTTGGAAGTGTAAGCATATTCCTATGTTTATTAAATTGCATTCCCCTTTGTTGA