Detailed information on CNT0021956


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VYP5|ZDH14_ARATH, E-value = 5e-122

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0001582, E-value = 8e-08 (G. max)
CNT0009014, E-value = 1e-12 (S. tuberosum)

Expression of CNT0021956

ERR364329: 13.163 RPKM

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MASQKTLDLVLISSSWLQISGNGCFEPGLGALVSSPTSRSIEEGGL*

>peptide 2 (69 aa)
MRMLVEEGEEETSIFPVTTFVRCRICKCGCHWCFIFLGNLVSLKFSDLSEANMYFLLSNLEDSDKKVALY

>peptide 3 (41 aa)
MGCIGSTGGIDITTVVLAISKAKVLIILQQLKDIRLNITWK*

>peptide 4 (30 aa)
MRREEWSGGNMTWAGGRISSRFSAQKRHTG*

>peptide 5 (46 aa)
MEFLQVLLWFEDVWLLDDIASYCHNWCFIFGSSHYKLWPSAVSWRF*

>peptide 6 (308 aa)
MMAWNFFKFCSGLRMFGYLMILLVIAIIGASYLAVVIISCGPQLFHGGFRAAISIFILVIFHFLLAMLIWSYCMVVFTDPGSVPENWRRLLDEENPETVA
SANSSDFVAPIVRSSAWSPSTSMARTSEGGYCGRCQNNKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGAGNYKFFLLFLMYTFLETTLDTLVLLPHFIEF
FGEAKNRSGSPGNLAISFLTFVLNLAFALSLLGFLIMHASLLLSNTTTIEVYEKRGVVRWKYDLGRRKNFEQVFGTKKAYWMIPVLSTEDLVNVPALRGL
DFPIRSDV*

>peptide 7 (50 aa)
MKVNFVLLLLFTDSHTDMIRYELLTSCFLISMKACVCLLKKEKKRHQYFQ*

>peptide 8 (47 aa)
MRLEDGSPLCVGSQLCWSRKLQILSTFPDVYIFGDNIGYASTITTFH*

>peptide 9 (71 aa)
MYLPSEVWISLSAQMFRPKELKSSCGNFVKLDLGESMCSNLLPFSENVWQRKTYDTQNLDTYGLHWFHRWH*

Sequence

>CNT0021956
GATTTCGGACCACTAAACCTGAATTTGTTGACACATGAAGTACAACAAGCAAAGTAACTCTTTCGCTTCCTTTGCTTTCCCAACAATGGACTGAGTTTTG
CCTGTCCTGTATCTGTCCCATGAATTGTTGGTACACATGAAAATTACAGGCGCTTATATGGCTTCTGATCCAGCCTTCGCAGGTGCAAAATGGCTTCCCA
GAAAACCCTAGACCTCGTTCTTATCTCTTCAAGCTGGCTTCAGATATCTGGAAACGGTTGTTTCGAACCAGGGTTAGGAGCGCTGGTCTCGTCCCCTACA
TCACGCTCGATAGAGGAGGGAGGTTTATGATGGCATGGAATTTCTTCAAGTTTTGCTCTGGTTTGAGGATGTTTGGTTACTTGATGATATTGCTAGTTAT
TGCCATAATTGGTGCTTCATATTTGGCAGTAGTCATTATAAGCTGTGGCCCTCAGCTGTTTCATGGAGGTTTTAGAGCTGCAATCTCGATCTTCATTCTC
GTCATCTTTCATTTTCTGCTTGCTATGTTGATATGGAGCTACTGCATGGTGGTTTTCACAGATCCAGGTTCCGTTCCTGAAAACTGGAGACGCTTACTTG
ATGAGGAAAATCCAGAGACTGTTGCTTCTGCAAACTCATCAGATTTTGTTGCCCCTATAGTTAGAAGTTCTGCATGGTCTCCATCTACTTCCATGGCAAG
AACATCAGAAGGAGGCTATTGCGGCCGCTGTCAGAATAATAAGCCTCCTCGCTGTCATCATTGCTCTGTTTGTCAAAGATGCGTCTTGAAGATGGATCAC
CATTGTGTGTGGGTAGTCAATTGTGTTGGAGCAGGAAACTACAAATTCTTTCTACTTTTCCTGATGTATACATTTTTGGAGACAACATTGGATACGCTAG
TACTATTACCACATTTCATTGAATTCTTTGGAGAAGCCAAGAACCGTTCTGGTTCACCTGGCAATCTTGCAATCAGCTTTCTCACATTTGTCCTCAACTT
GGCGTTTGCATTGAGTCTTCTTGGTTTCCTTATCATGCATGCATCTCTGCTTTTAAGCAACACGACAACAATTGAGGTGTATGAGAAGAGAGGAGTGGTC
AGGTGGAAATATGACTTGGGCAGGCGGAAGAATTTCGAGCAGGTTTTCGGCACAAAAAAGGCATACTGGATGATTCCCGTGCTCTCAACAGAGGATTTGG
TAAATGTACCTGCCCTCCGAGGTTTGGATTTCCCTATCCGCTCAGATGTTTAGGCCCAAGGAACTCAAATCATCTTGTGGGAATTTTGTAAAGCTTGACC
TTGGAGAATCAATGTGCAGTAATTTGTTACCATTCAGCGAAAATGTCTGGCAAAGGAAAACATATGATACACAAAACTTAGATACGTATGGGCTGCATTG
GTTCCACCGGTGGCATTGACATAACTACCGTGGTGTTGGCTATCAGCAAAGCAAAAGTATTGATTATATTACAACAACTGAAAGATATCAGACTTAATAT
CACTTGGAAATGAAAGTAAATTTTGTGCTTCTATTACTTTTTACAGATTCTCATACTGATATGATAAGATATGAACTGCTCACTAGCTGCTTTCTTATTT
CTATGAAAGCATGCGTATGCTTGTTGAAGAAGGAGAAGAAGAGACATCAATATTTCCAGTAACTACTTTTGTGAGATGTAGGATCTGCAAATGTGGCTGC
CATTGGTGTTTCATTTTTCTTGGAAATTTGGTTTCCCTTAAATTTAGTGACTTATCTGAAGCCAACATGTACTTTTTACTAAGTAATTTAGAAGATTCAG
ATAAGAAGGTTGCTCTTTAT