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Detailed information on CNT0022033


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 2e-12 (V. vinifera)
CNT0042615, E-value = 2e-12 (A. thaliana)
CNT0035175, E-value = 9e-12 (P. patens)
CNT0020781, E-value = 2e-12 (Z. mays)
CNT0000589, E-value = 6e-13 (G. max)
CNT0029639, E-value = 6e-13 (O. sativa)
CNT0008755, E-value = 2e-09 (S. tuberosum)
CNT0038248, E-value = 9e-12 (S. moellendorffii)

Expression of CNT0022033

ERR364329: 40.026 RPKM

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MTRNYKEIRKVVFSFFLILSSNLVDGGVNFVTTLEQQGNCALILMRKLHWICLFLVFSYLIPS*

>peptide 2 (121 aa)
HTQPHHQIYAANVAKTFAVKKPVLNMSKSAIVVTGSRVYSSFMRLMARNKPMVSGDMASSVLPSSTRSCVRRRSITRLPVELSCFGSLPLHSAIASARLQ
SILSAEFHNQGLLPQGISMPL*

>peptide 3 (35 aa)
YTTPSPNICSKRGKNVCSEKTSAQHEQIRHCCYRV*

>peptide 4 (45 aa)
MCMRERERERERERELGNNEELCGVNVIWSLGMLVVCVCVRESGH*

>peptide 5 (44 aa)
MWCQCHMEPRHACGVCVCEREWTLKNYVNFQVDPIHACGERENG*

Sequence

>CNT0022033
CATACACAACCCCATCACCAAATATATGCAGCAAACGTGGCAAAAACGTTTGCAGTGAAAAAACCAGTGCTCAACATGAGCAAATCCGCCATTGTTGTTA
CAGGGTCTAGGGTTTATTCTTCATTTATGAGGTTAATGGCCCGTAACAAACCCATGGTTTCAGGTGACATGGCTTCCTCTGTGTTGCCCTCCTCTACCAG
ATCTTGTGTTAGGCGGCGTTCTATTACTAGATTACCGGTGGAGCTTAGCTGTTTTGGATCATTGCCACTGCACAGTGCAATCGCTTCTGCTCGATTGCAA
TCGATACTCTCCGCTGAGTTTCATAACCAGGGATTGCTTCCTCAAGGTATTTCAATGCCTTTATGACAAGAAATTATAAGGAAATACGGAAGGTGGTATT
TTCTTTTTTTCTCATACTTTCAAGTAATTTAGTGGATGGTGGAGTTAACTTTGTTACAACTTTAGAGCAACAGGGGAACTGTGCCTTGATTTTGATGAGA
AAACTGCATTGGATTTGCTTATTCCTTGTTTTCTCCTATCTCATTCCTTCATAACCAGATTTATTGGAGCCATGTGGATCTGATGTGTATGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAATTGGGTAACAATGAAGAATTATGTGGTGTCAATGTCATATGGAGCCTAGGCATGCTTGTGGTGTGTGTGTGTG
TGAGAGAGAGTGGACACTGAAGAATTATGTCAATTTTCAAGTGGATCCTATCCATGCTTGTGGAGAGAGAGAGAATGGTTAAGTATGTCGTTGTGGGA