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Detailed information on CNT0022055


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004080, E-value = 5e-11 (V. vinifera)
CNT0042615, E-value = 2e-10 (A. thaliana)
CNT0035175, E-value = 5e-11 (P. patens)
CNT0020781, E-value = 2e-10 (Z. mays)
CNT0002871, E-value = 2e-10 (G. max)
CNT0030567, E-value = 3e-12 (O. sativa)
CNT0008755, E-value = 7e-10 (S. tuberosum)
CNT0038248, E-value = 5e-11 (S. moellendorffii)

Expression of CNT0022055

ERR364329: 14.961 RPKM

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSIWGFRPLQLCVKESVGASGGIWMLWAPLFWCVNDLLSIYGLFRMFFFMLIMVAVC*

>peptide 2 (51 aa)
MANICRSFAKVVRGDSLVSINREGVNLVENSYQIADQWWVKVDDEICKIRR*

>peptide 3 (69 aa)
YFIRIKIGQVHFPLCNSLVAILSFFVSEDLRGVAAFLRRNLLKQETSILRDVNYRTTTIEAGTFLCVCV*

>peptide 4 (32 aa)
MCVCVRERERERERERWLISVDLLRRLFGAIL*

Sequence

>CNT0022055
ATACTTTATACGTATCAAAATAGGTCAGGTGCATTTTCCGCTTTGTAATTCTTTGGTGGCCATTTTAAGTTTTTTTGTCTCTGAAGATCTTAGGGGCGTT
GCTGCCTTCTTGAGAAGAAACTTGTTGAAACAGGAGACCTCCATTTTGCGAGACGTGAACTATCGGACTACCACCATTGAGGCAGGGACATTTTTATGTG
TGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCTAATATCTGTAGATCTTTTGCGAAGGTTGTTCGGGGCGATTCTTTAGTTAGTA
TTAATCGTGAAGGTGTGAATTTGGTGGAAAATTCTTATCAGATAGCTGATCAATGGTGGGTGAAGGTGGATGATGAAATCTGTAAAATCAGGAGATAGGG
GTTGTGACCATCTCTTTTAGGCTCTTTTTCTCCTCCAATTCAAGATCTGAGAAGGCTAGATCATTGGGCCTGGAAAAATTGGAATCTGGCTTAAAAACCT
GGATATGTGTTTTTCCTTAATAGTTTTGTTTTGTTCAATTTGTCTGATCATATTGTAAAGAAATAGCTCTTAAGGAAAAACATTGGAGATTCAGAGGCAG
CCTGCTAACTTTGCAAGATTGGTCTAAATCTTTAAGTTTTTCAAATATTGTTAAAGAAAGATCTGGATTAGAGTTAAGAAAGAACGTCCATATTTGGTTT
TGATTCAAGAGACCAAAATCTCTAATATTTTGTTTTACCATGTTATGTCTATTTGGGGTTTTAGACCTTTGCAATTATGTGTAAAAGAATCTGTTGGTGC
TTCTGGGGGTATATGGATGTTATGGGCCCCTCTGTTTTGGTGTGTGAATGATCTTCTATCAATATATGGTCTATTTCGTATGTTTTTCTTCATGTTAATT
ATGGTTGCTGTTTGTTGATTACAAATGTGTATGGTCCTAATGAAGCTAGTTCAAGGCATGATTTTTGCAATGAACACTTTAATAAGATTGGGG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ERN00518 hypothetical protein protein coding CNT0022055 118 99 CDS Trans