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Detailed information on CNT0022155


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8QZY9|SF3B4_MOUSE, E-value = 5e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005713, E-value = 4e-12 (V. vinifera)
CNT0042889, E-value = 1e-12 (A. thaliana)
CNT0034678, E-value = 1e-12 (P. patens)
CNT0002153, E-value = 1e-09 (G. max)
CNT0031800, E-value = 3e-13 (O. sativa)
CNT0011121, E-value = 6e-08 (S. tuberosum)
CNT0038582, E-value = 1e-09 (S. moellendorffii)

Expression of CNT0022155

ERR364329: 71.414 RPKM

Peptides detected in this lncRNA

>peptide 1 (67 aa)
ALLIEIIRALNLPASRRRFRGILEIFSLRLPVIWTGKATDPVLERHLLLISVAKSLLGFSFVVIRQS*

>peptide 2 (76 aa)
MPTCIRMPLVTLKLALQCLCLMALEWKLVHTMEITDNLNLPINVLVLQTSPGMSHNYMTRGILSLILSSCLMVHGF*

>peptide 3 (121 aa)
MDVCLSVLDFVSIADYLCNVFRQKIDMLALRWALPQLFVQPLSLSFSLSLSLSLSLVNKLQLSLSLSLWVIQGGNFKLLCSILCCSMFFSFLPSQLLCSI
LFSSMFQFVCLHICVELDIVNA

>peptide 4 (197 aa)
MTGNTACTIFIGNLDEKVNDRVLYEILIQAGRIVDMHIPRDKETNRHKGYAFAEYETEEIAQYAVKLFSGLVSIHKKTLRFSMSGQNKVASQDPNPNPNM
PSLRRSPPSKRKHLEVSNSSPQLFTPCRSDAYLHSNASSYSQACSPVPMSNGPRMETSSYYGNHRQPQSAYQRFGTPNQPRHVPQLYDSRYPITNSF*

>peptide 5 (84 aa)
MGSAPVVCATSLSFFLSLSLSLSLSCEQIAVESLSLSLGYTGGKFQIAMQHFVLFHVFQFFAFPIAMQHFVFFHVSVCLPSHLR*

Sequence

>CNT0022155
CGCCCTACTAATTGAGATCATACGCGCTCTAAATTTACCGGCGAGCCGTCGACGTTTTCGGGGAATTCTAGAGATCTTTTCGTTGCGATTGCCGGTGATT
TGGACGGGGAAAGCTACAGATCCGGTGCTGGAGAGACATCTTCTGTTAATTTCCGTGGCAAAGTCTTTGTTAGGGTTTAGTTTTGTTGTAATCAGGCAAT
CATGACTGGAAACACTGCTTGTACCATCTTTATAGGTAATTTGGATGAGAAGGTAAATGATAGAGTACTATATGAGATACTGATTCAGGCTGGCCGTATA
GTAGACATGCACATCCCAAGGGACAAGGAAACAAACCGCCATAAAGGCTATGCCTTTGCAGAGTATGAAACTGAGGAGATAGCTCAGTATGCTGTGAAGT
TGTTCTCAGGCCTTGTTTCAATTCATAAAAAAACCCTTCGCTTTTCGATGTCTGGTCAAAACAAGGTTGCATCTCAGGATCCCAATCCTAATCCAAACAT
GCCTTCTCTTCGGAGATCGCCGCCTAGTAAGAGAAAACATTTGGAGGTTTCCAATTCTTCTCCGCAATTATTTACACCATGCAGATCCGATGCCTACTTG
CATTCGAATGCCTCTAGTTACTCTCAAGCTTGCTCTCCAGTGCCTATGTCTAATGGCCCTAGAATGGAAACTAGTTCATACTATGGAAATCACCGACAAC
CTCAATCTGCCTATCAACGTTTTGGTACTCCAAACCAGCCCAGGCATGTCCCACAATTATATGACTCGAGGTATCCTATCACTAATTCTTTCTAGCTGCC
TCATGGTTCATGGTTTTTAGCAGGGACAATCTCTCTCTCGTTCAAATCCCTTTGTACTATAGTTTTCTGTAGGCTGGAGGCACTAATTGCTAGCTTTTAG
TTCTGAATAGGTGTTTGTGTTTAGATCGATAAATTTAGATGTGTTTTGTAATAGTGGTAGAACTTAAATGGTTGACTGAAAGTTGATTCCTGATGGACGT
GTGCCTTTCTGTGCTGGACTTCGTTAGCATCGCTGACTACTTATGTAACGTGTTTAGACAGAAGATTGACATGCTCGCTCTTAGATGGGCTCTGCCCCAG
TTGTTTGTGCAACCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGAACAAATTGCAGTTGAGTCTCTCTCTCTCTCTCTGGG
TTATACAGGGGGGAAATTTCAAATTGCTATGCAGCATTTTGTGCTGTTCCATGTTTTTCAGTTTTTTGCCTTCCCAATTGCTATGCAGCATTTTGTTTTC
TTCCATGTTTCAGTTTGTTTGCCTTCACATTTGCGTTGAACTTGATATTGTGAATGCGTC