« Back to Amborella trichopoda search


Detailed information on CNT0022348


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M0X9|4CLL7_ARATH, E-value = 2e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 6e-14 (V. vinifera)
CNT0041036, E-value = 1e-14 (A. thaliana)
CNT0034678, E-value = 9e-13 (P. patens)
CNT0002153, E-value = 1e-08 (G. max)
CNT0031800, E-value = 2e-13 (O. sativa)
CNT0011121, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 2e-13 (S. moellendorffii)

Expression of CNT0022348

ERR364329: 4.479 RPKM

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSEPQRLESPQTSCPIWGMVCWNQVELFHLK*

>peptide 2 (50 aa)
MRMKGKHYFGSTGFLFPGVEARIVNVDTLKSIPPKLVRGYMDSWTKYNVS*

>peptide 3 (42 aa)
DILPKKISPFLASFGGPFRGNGERNRGEENWRKIFLGRETRD*

>peptide 4 (31 aa)
MQVKCNICNITVGHRLPVSRKHTMSTNFESK*

Sequence

>CNT0022348
GATATTCTCCCCAAAAAAATTTCCCCCTTTTTAGCGTCTTTTGGGGGACCATTTAGGGGGAATGGGGAGAGAAACCGAGGGGAGGAGAATTGGAGAAAGA
TTTTTTTGGGGAGAGAGACGAGAGACTAGAGATAGAGATTGAAACCCTAGCAGAGGAAAAAGAACCGATAGAGATGAAAAACCTGAGTAAACAACAGGAG
AGAAAACCCTGGATATTACATCAGGGAGCCTGGGCCTCCTGAGAGAAACCCCAAATATACCCTTAGGACATAACTCACTATTAGAGACTTGCTGATCGAG
GCCTGGACCAGAAGGGCAAGAGCAACCGATTCTGATATGAGTGAGCCCCAAAGGCTCGAGAGTCCCCAGACATCCTGCCCGATTTGGGGTATGGTATGCT
GGAATCAAGTTGAACTGTTTCACTTGAAATGAGAATGAAGGGAAAGCATTATTTTGGATCCACTGGATTTCTTTTTCCAGGTGTTGAAGCTAGAATAGTC
AATGTTGACACGTTGAAGTCTATTCCTCCTAAATTAGTCAGGGGATATATGGATTCGTGGACCAAATATAATGTAAGTTGATCAATGTCGTGATTGCATC
ATTCAAAAGATTGCGGAGGGTGACCTTTGTGAAAAAAGTGCACCAAAATCAGCATCTGGAAAGATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATTGA
AGATGTGAGGATGACCTAGACCCTATACTCTTAGTGTGGAACTGTTGCTTTCGGATCAACTAAGGGTGATTATCAAAGGCAGAGTTCGACCTGATTTCTT
CTTCTGCAGTGGCTCCGAAAAAGATGAATAAGCTTTGGACTGTAGGTCGAGAACTGGCATGCAACCTTGAGATAAAGAATGCAAGTCAAATGCAACATAT
GTAATATAACTGTGGGACACCGACTGCCCGTGAGTAGGAAACATACCATGTCAACTAACTTCGAGAGCAAATAAAGGTTGTCCCCACAAAATACGCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTGCGGTTCTATTAGGAATGTTTCTAAATTTTGAGAGAAATCAAAAGATGTTTGGATGTTACTGT
TAAAAATAAGCTTTGATTATGTTCAAGGGTATTTTGGATATTAGATTTAAATGTAAGGGAC