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Detailed information on CNT0022351


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8GYH6|RTNLP_ARATH, E-value = 1e-66

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 2e-08 (V. vinifera)
CNT0043112, E-value = 2e-08 (A. thaliana)
CNT0035294, E-value = 2e-08 (P. patens)
CNT0017680, E-value = 6e-06 (Z. mays)
CNT0002153, E-value = 4e-07 (G. max)
CNT0031800, E-value = 4e-07 (O. sativa)
CNT0012080, E-value = 1e-06 (S. tuberosum)
CNT0039778, E-value = 4e-07 (S. moellendorffii)

Expression of CNT0022351

ERR364329: 17.92 RPKM

Peptides detected in this lncRNA

>peptide 1 (66 aa)
CSRIPPPSLLLRHTRVISLPLCNTIGSSLPLRAIVRSSLSPIDLFYAIRPSLWTQSKENGYLARSL*

>peptide 2 (242 aa)
MDILQEVSKIDANADARKDKLPEQSSSGSSDCIPLSKGYKLFDRQRSIRHVMGGGKAADVILWKQRRVTLAIIVGATIAWLLFEHSGVSFLSISSDVLLL
LIVILFVRANCAVLWNKQLQPLPELVLSEEMVNNSAASFRVKLNYMLLMAHDIILGRDFKLFFKIVVCLWLVSIIGGFLSFFTLMYVGIIMSITLTALYN
KYEERVDRCAGIVHSQLSKQYSRVDANVLSKLPHGFSKDKDR*

>peptide 3 (43 aa)
MCLLFHVPSPFSSELLQAGLMSTEKTIFRAFLIGGKSGKHWKL*

>peptide 4 (29 aa)
MEQTTSAIARVGLVRGNGKQFCCFFPCQT*

>peptide 5 (146 aa)
MSLLHLSPIRRNHIFLCLLASRGNLSPSLSLDFVFSPSLTHAEETTSVFTCLERKPHPLSLSISRSLEFVYSRSLSRKKKPRLRVFACFERKPYPLSLSP
HRCFTLSLFLHICVFYPLFLYMECWNRKGQFTEATTELLPYYSIGA*

>peptide 6 (109 aa)
MQSDSPALSLTETHQSHLSPPLQYHRVLSPSSRDRQVFPVSYRPLLRNQAISLDTIEGEWISCKKSLKLMLMLMRERINCLSNLLLVVQIVFHYQRVINC
LIDRDPFAM*

>peptide 7 (125 aa)
MNLQLISSGGRICSFLQVLFSSRESEAKLQPCDSTGATCIQPVFVFCRLSLSLFQPVIVFCRLSLFQQVFVFFRLSLSLSLSLFQPVFVFCRLSLSVWCR
LSKRALTQCAPGGACKSLHVHVISL*

>peptide 8 (30 aa)
MACIYNWWFLVVLYSYVCWNHHVNHPYCLV*

Sequence

>CNT0022351
ATGCAGTCGGATTCCCCCGCCCTCTCTCTTACTGAGACACACCAGAGTCATCTCTCTCCCCCTCTGCAATACCATCGGGTCCTCTCTCCCTCTTCGCGCG
ATCGTCAGGTCTTCCCTGTCTCCTATCGACCTCTTCTACGCAATCAGGCCATCTCTCTGGACACAATCGAAGGAGAATGGATATCTTGCAAGAAGTCTCT
AAAATTGATGCTAATGCTGATGCGCGAAAGGATAAATTGCCTGAGCAATCTTCTTCTGGTAGTTCAGATTGTATTCCATTATCAAAGGGTTATAAATTGT
TTGATCGACAGAGATCCATTCGCCATGTAATGGGAGGAGGAAAAGCGGCGGACGTCATCCTGTGGAAGCAGAGGCGTGTAACACTTGCCATTATTGTTGG
TGCTACAATTGCATGGCTACTATTTGAGCATTCAGGAGTATCTTTCCTATCAATTTCTTCAGATGTATTGCTTCTCTTGATTGTAATCCTGTTTGTTAGG
GCCAATTGTGCTGTTTTATGGAACAAACAACTTCAGCCATTGCCAGAGTTGGTCTTGTCAGAGGAAATGGTAAACAATTCTGCTGCTTCTTTCCGTGTCA
AACTTAACTATATGCTACTCATGGCTCATGATATCATTCTCGGCAGGGATTTCAAACTCTTTTTTAAGATCGTGGTCTGCCTATGGCTTGTATCTATAAT
TGGTGGTTTCTTGTCGTTCTTTACTCTTATGTATGTTGGAATCATCATGTCAATCACCCTTACTGCCTTGTATAACAAATATGAGGAGCGTGTGGACAGG
TGTGCTGGAATAGTTCACAGTCAACTCTCTAAACAGTACAGCAGAGTTGATGCAAATGTTTTAAGTAAATTACCTCATGGGTTTTCAAAAGACAAAGACA
GATAACCACTTCCAAACTGCATGAAATGAATTTGCAGTTAATCTCAAGTGGTGGAAGGATCTGTAGCTTTTTACAAGTCTTGTTTAGCTCTCGGGAGAGT
GAAGCCAAGCTCCAACCATGTGACTCAACTGGGGCAACTTGTATACAACCAGTCTTTGTTTTTTGTAGACTCTCTCTCTCTCTCTTTCAACCAGTCATTG
TATTTTGTAGACTCTCTCTCTTTCAACAAGTCTTTGTATTTTTTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAACCAGTCTTTGTATTTTGTAG
ACTCTCTCTCTCTGTGTGGTGCAGATTGAGCAAAAGGGCATTGACTCAATGTGCCCCTGGTGGAGCTTGTAAAAGTCTGCATGTGCATGTAATTTCTCTT
TGATCACACCTCCCTTTTCATTCTGACCATGCCTATAAGAATATGTCTTTACTTCATCTCTCGCCCATAAGAAGAAACCACATCTTTTTGTGTTTGCTTG
CTTCGAGAGGAAACCTCAGCCCGTCTCTCTCTCTAGATTTTGTCTTTAGTCCATCTCTCACCCATGCAGAAGAAACCACATCTGTGTTTACCTGCTTAGA
AAGGAAACCTCACCCTCTCTCTCTCTCTATCTCTCGCTCTCTAGAATTTGTCTATAGTCGATCTCTTTCCCGTAAGAAGAAACCACGTCTTCGTGTGTTT
GCTTGCTTCGAGAGGAAACCTTACCCTCTCTCTCTTTCTCCACATCGGTGTTTTACCCTCTCTCTCTTTCTCCACATCTGTGTGTTTTACCCTCTCTTTC
TCTATATGGAGTGCTGGAATAGAAAAGGGCAATTCACTGAAGCCACGACTGAGCTCTTGCCTTATTATAGCATTGGGGCATAGCTTGCATGTGCCTCTTA
TTTCATGTCCCATCTCCATTTTCCAGCGAACTTCTTCAAGCTGGACTTATGTCAACTGAGAAAACAATCTTTAGGGCGTTTTTGATTGGTGGAAAAAGCG
GAAAACATTGGAAATTGTAAGTTTTTTCATTAAAAGTTTGTATAGTCGATCTTAATTAGTTGTAAAAAA