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Detailed information on CNT0022405


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 1e-55

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006991, E-value = 2e-44 (V. vinifera)
CNT0042380, E-value = 1e-20 (A. thaliana)
CNT0034732, E-value = 2e-06 (P. patens)
CNT0001132, E-value = 8e-31 (G. max)
CNT0010904, E-value = 1e-32 (S. tuberosum)

Expression of CNT0022405

ERR364329: 34.31 RPKM

Peptides detected in this lncRNA

>peptide 1 (87 aa)
LNYRLDMLTEWHAIASWTWDAQDETCGICRMAFDGCCPDCKFPGDDCPLIWGACNHAFHLHCILKWVNSQTPQPQCPMCRREWQFKE*

>peptide 2 (38 aa)
MNQYSNLPVVLFGLIVNFGVSSFFANLEVVRYCIRTCL*

>peptide 3 (35 aa)
MCLKLITYCYSAPFAVGFFCCCCDCCWCYYYYDYY*

>peptide 4 (44 aa)
MLKMKLVGFVEWLSMAVVQIVNFQAMTAHLFGVHVTMHFTSIAS*

Sequence

>CNT0022405
CTTGAATTACCGGTTGGACATGCTTACAGAGTGGCATGCCATAGCTTCATGGACTTGGGATGCTCAAGATGAAACTTGTGGGATTTGTAGAATGGCTTTC
GATGGCTGTTGTCCAGATTGTAAATTTCCAGGCGATGACTGCCCACTTATTTGGGGTGCATGTAACCATGCATTTCACCTCCATTGCATCCTGAAGTGGG
TCAATTCGCAAACTCCTCAGCCACAGTGTCCCATGTGCAGGAGAGAATGGCAATTTAAAGAGTAGTAAACTAAGTTTCGTAGTACATGAACCAATATTCC
GTAGTACATGAACCAATATTCTAATCTACCGGTTGTGTTGTTTGGTCTAATTGTCAATTTTGGAGTGAGTAGCTTCTTTGCAAATCTGGAGGTAGTGAGG
TACTGCATTCGTACCTGCTTATAACTTTGTGATCATTTGATGTTCATCGGTCTTAGAAGATGAAATTCTTAAGTTTTCGATCAACTTAAAAGTCATTCTT
TACGCATTGCCTCGGGAGCCCATCATGTGCCTCAAGCTTATAACTTATTGTTATTCTGCACCCTTTGCTGTTGGTTTTTTTTGTTGTTGTTGTGACTGCT
GCTGGTGTTATTACTACTATGATTATTACTGATACTGACATTCTTGTGTTTATGGATTGATTGTTGAGGATCGCACAAGATTACATACACATTTCTTGGA
TCTTGAACTCAAGTTATTGTTGATTTCTAAAGATTAAGAGTTTGTTATGAGGTTTGCTTAAGAGAGCCTTTCGGTTTGCTTATGTTCAACTGATTCAGGA
GATGTCTTCAGGTGTATTCGTAAAGACTGAAAAGCAGACTTTCGAAGAAATAAAACTTGAGAGGCA