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Detailed information on CNT0022482


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LG86|IAA2_ORYSJ, E-value = 2e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 3e-11 (V. vinifera)
CNT0042889, E-value = 3e-11 (A. thaliana)
CNT0035294, E-value = 4e-13 (P. patens)
CNT0002061, E-value = 2e-09 (G. max)
CNT0031800, E-value = 7e-12 (O. sativa)
CNT0012080, E-value = 1e-07 (S. tuberosum)
CNT0039778, E-value = 4e-10 (S. moellendorffii)

Expression of CNT0022482

ERR364329: 2.484 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNQSISAATRSLVFIRKSTHSPSLSLSLSLSLSML*

>peptide 2 (73 aa)
SNGKNETNTAAIADHVLIYEDNEGDRMLVGDVPWEMFVSTVKRLRIIQSSEAPPALGITRTLERQQGPPVEGR*

Sequence

>CNT0022482
GAGCAACGGAAAGAATGAAACGAATACTGCGGCCATTGCGGATCACGTTCTTATTTACGAGGATAATGAAGGAGATCGCATGTTAGTGGGTGATGTACCA
TGGGAGATGTTTGTTAGCACAGTGAAGAGGCTTAGGATCATCCAGAGCTCAGAAGCACCACCTGCACTAGGCATTACAAGGACCTTAGAAAGGCAACAGG
GCCCACCAGTGGAAGGAAGATAAGATGAGCCCACCAGTGGAAGGAAGATAATATGAATCAATCAATTAGTGCAGCTACAAGAAGCTTGGTTTTCATTCGG
AAGAGCACTCACTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATGCTTTAAGGTGATTCAAATTCCTTGGTTCTAGAGAAATAGACCTAAG
GGAAGGTGATGTATAAAAGATGGTATTGTCATAGGTATGGTGGATCTTGTTCCCCTTACTTGAACTCTCCTTTGTAAACCTTTATTGTTCTATGAATGTG
ACCTATTTTGCCTACATCGTTCTAATTAGTTGTACTTCTCTTCTATTTAGAGTTGGGTGCGGTTTGTATAGAGCCTAGGCTCTAAACCATCAAATTAG