« Back to Amborella trichopoda searchLow confident - view alignments »


Detailed information on CNT0022555


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q1ACB3|HSTC_ARATH, E-value = 1e-171

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021508, E-value = 4e-06 (Z. mays)
CNT0001184, E-value = 3e-07 (G. max)
CNT0031845, E-value = 4e-06 (O. sativa)

Expression of CNT0022555

ERR364329: 38.966 RPKM

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HRKSMCRLLPVCRSERERERERRSERRRME*

>peptide 2 (99 aa)
PQKIHVSSTAGLSLREREREREEEREEAHGVRNGNPLCSSNGFSSLDLRFSSNSHSRTFFSPQYQSPRPTTSVRYSTELQTLSFSAFEFGFCHFFYINA*

>peptide 3 (57 aa)
MLNISFSLLFSMGSQLYNLMENNIFLYPFFFSFWNFFLRMDWKLHNLGSAKCLLMPS*

>peptide 4 (393 aa)
MDLVLSTFASPRIPTLAHSSRPSINPLGPPPLSDTQQSFKLFLSPHSSLGFATSSISTLNVSPTFRGHHGRARRTVLASTQIGVGGPDPSLNKLSEFRDA
CWRFLRPHTIRGTALGSTALVARALIENSQLIDWSLLLKALCGLFALLCGNGYIVGINQIYDIGIDKVNKPFLPIAAGDLSVKSAWLLVIFFASAGLLIV
GMNFGPFITALYTFGLFLGTIYSVPPFRMKRFPVAAFLIIATVRGFLLNFGVYYATRASLGLPFEWSLPIVFITTFVTLFALVIAITKDLPDVEGDRKFK
ISTLATTLGVRNVAFLGSGLLLVNYVGAILAAAYMPQAFRRNLMIATHSILGLSLIFQSWVLEKANYTKESISSFYRFIWNLFYAEYIIFPFI*

>peptide 5 (42 aa)
MVASYIFCLSRSSDCRNELWSIHHGTLHFWPFPWHYLFCSTI*

>peptide 6 (43 aa)
PTENPCVVYCRFVAQRERERERGGARGGAWSKKRESPLLLQWI*

Sequence

>CNT0022555
CCCACAGAAAATCCATGTGTCGTCTACTGCCGGTTTGTCGCTCAGAGAGAGAGAGAGAGAGAGAGAGGAGGAGCGAGAGGAGGCGCATGGAGTAAGAAAC
GGGAATCCCCTCTGCTCCTCCAATGGATTTAGTTCTCTCGACCTTCGCTTCTCCTCGAATTCCCACTCTCGCACATTCTTCTCGCCCCAGTATCAATCCC
CTCGGCCCACCACCTCTGTCAGATACTCAACAGAGCTTCAAACTCTTTCTTTCTCCGCATTCGAGTTTGGGTTTTGCCACTTCTTCTATATCAACGCTTA
ACGTGAGCCCAACCTTCAGGGGCCACCATGGGAGAGCTCGTCGAACTGTTCTGGCCAGTACTCAAATTGGAGTTGGTGGACCTGATCCCTCATTGAATAA
ACTTTCAGAGTTTAGAGATGCATGTTGGAGATTTCTAAGGCCTCATACAATTCGAGGTACTGCACTTGGGTCGACGGCTTTGGTTGCTCGGGCCCTGATT
GAGAACTCACAGCTGATTGATTGGTCATTGCTACTTAAGGCACTCTGTGGACTATTTGCTCTCTTATGTGGAAATGGATATATAGTTGGAATTAATCAAA
TATACGATATTGGGATTGACAAGGTAAACAAACCTTTCCTACCTATAGCTGCTGGGGATCTGTCAGTTAAGTCAGCATGGTTGCTAGTTATATTTTTTGC
CTCAGCCGGTCTTCTGATTGTCGGAATGAACTTTGGTCCATTCATCACGGCACTCTACACTTTTGGCCTTTTCCTTGGCACTATCTATTCTGTTCCACCA
TTTAGAATGAAGAGGTTTCCTGTTGCCGCATTTCTTATCATTGCTACTGTACGCGGTTTCCTTCTAAACTTTGGCGTATATTATGCTACTAGGGCTTCTC
TCGGTCTCCCATTTGAGTGGAGTTTGCCTATAGTTTTCATCACAACTTTTGTAACATTGTTTGCTTTGGTGATTGCCATAACGAAGGATCTTCCTGATGT
TGAGGGAGATCGCAAGTTCAAGATATCAACCTTGGCAACCACACTTGGTGTTAGGAATGTTGCATTTTTAGGTTCTGGTCTTCTGTTGGTAAATTACGTT
GGTGCCATTTTGGCTGCAGCTTACATGCCTCAGGCTTTCAGGCGAAATTTGATGATAGCAACTCACTCCATATTAGGACTGTCTTTGATATTTCAGTCAT
GGGTGTTGGAAAAGGCAAATTATACCAAGGAATCAATATCAAGTTTCTATCGTTTTATCTGGAACCTATTCTATGCTGAATATATCATTTTCCCTTTTAT
TTAGCATGGGATCACAGTTGTATAATTTGATGGAAAACAACATCTTTTTGTATCCCTTTTTTTTTTCTTTTTGGAATTTTTTTTTACGCATGGACTGGAA
ACTACATAATTTGGGAAGCGCGAAGTGTTTGTTAATGCCCAGTTGAAATTTGTTGTAACAAATTGCTTCATGATTGAAAACATCTGAATCACCACTGACT
CATCAC