« Back to Amborella trichopoda search


Detailed information on CNT0022867


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0020564, E-value = 1e-06 (Z. mays)
CNT0032285, E-value = 4e-50 (O. sativa)
CNT0011130, E-value = 7e-24 (S. tuberosum)

Expression of CNT0022867

ERR364329: 33.188 RPKM

Peptides detected in this lncRNA

>peptide 1 (405 aa)
MKMGTNNRGGLLRKPNETMRLIITTVFGVVFGFLIGFSFPSSSLTKFNFPTGLLSSVDLSFIEDKDSGIATQALLNHAWTTRNMNKSRSMQNHNSTKIYI
PTNPRGAETLPPGIIASESDYYLRRLWGKPSEDLTVKQKYLVTFTVGYDQKSNIEAAVKKFSENFTILLFHYDGRTSEWDEFEWSRRAIHVSARRQTKWW
YAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAEKYIELIRKHGLEISQPGLDPNRGLTWQMTKRRGNSEVHTETEERPGWCSDPHLPPCAAFVEIMAPVFS
RDAWRCVWHMIQNDLVHGWGLDFALRKCVEPAHEKIGVVDSQWIVHQVVPSLGNQGQSDNGKAPWEGVRERCRKEWAIFQGRMENAEKAYFAEMGLPQPN
ISKAH*

>peptide 2 (29 aa)
MVFCFSPTNRTCRLLLADIYSFKLELLCL*

>peptide 3 (43 aa)
MIRKVILRQQLKSSQKILLFCSSTTMEGQVNGMSSSGQGGLFM*

>peptide 4 (55 aa)
MVKHHGKEFGRGAEKSGLSFKVEWRMQRRRILQRWGYLNPISRKHTEDLFTFVAL*

>peptide 5 (48 aa)
MGRSSGEVQKRVGYLSRSNGECREGVFCRDGVTSTQYLESTLKICLLS*

Sequence

>CNT0022867
GAAATGAATGACAAATGATGAGAGAGAGAGGTACAAAATGATTTACAGGGGCAAGCTCCACCTGTGTGGAATTCATGAAGAGTGAGAAAGAAACCGCGAA
ATAAGATACCACGCTCTTCTTGTTTATATCAACACAAACGCCCCCAAACCTCTTTCTCTCTCTAAGATACCACGCTCTTCTCGTTCCATTCCTGCACAGA
AACCCAACCTCCCTCTCTCTCTACTCACGAGGAAGACATAGGACCTTCGCTTTCTCTTGATTTCAGAGACCTAAAGTCGTGAAATTGCAGAGGTTTTTGC
TAGTCAATTGCTTCTTTCTCTAGAAATTGGGCTTGGGCTTCTCTTGATGGCATCAGGGGATGCGCGGCCATGGTTTTTTGCTTCAGTCCAACCAATAGGA
CTTGCAGATTGTTACTAGCCGATATTTATAGTTTCAAGCTTGAACTACTTTGCCTATAAAGAAGCAAGTAAACCCTGCAATTAGACTCCCTTTCTTATTT
GAGGCACTGGCAGCTGCAAACTTTGTTTAATTAAATGATGTGGTTTGGATTTTTTATGGAAAGACATTGCTGTTTTGTGACGTGAGAAGATTTGAAGAGT
CATCATGAAAATGGGGACCAACAACCGAGGTGGACTTTTAAGGAAACCAAATGAGACTATGAGGCTTATTATTACTACTGTTTTTGGAGTTGTTTTTGGT
TTCTTGATAGGGTTTTCCTTCCCCTCTTCTTCTTTAACAAAGTTCAACTTCCCCACTGGACTTCTGTCTTCTGTTGACCTTTCATTCATCGAGGATAAGG
ACTCTGGGATTGCTACCCAAGCACTTTTGAACCATGCTTGGACAACACGAAATATGAATAAGAGCAGATCCATGCAAAATCATAACTCCACAAAGATATA
CATTCCAACAAATCCCCGTGGTGCTGAGACACTACCCCCCGGAATTATTGCATCTGAGTCAGATTATTACCTTCGGAGATTGTGGGGTAAGCCTAGTGAG
GACTTGACCGTTAAACAAAAGTATCTGGTGACATTTACTGTGGGATATGATCAGAAAAGTAATATTGAGGCAGCAGTTAAAAAGTTCTCAGAAAATTTTA
CTATTTTGCTCTTCCACTACGATGGAAGGACAAGTGAATGGGATGAGTTCGAGTGGTCAAGGAGGGCTATTCATGTGAGCGCAAGGAGACAAACAAAGTG
GTGGTACGCCAAGCGCTTTTTGCACCCGGACATCGTAGCCCCATATGACTACATATTCATTTGGGATGAAGATCTAGGTGTTGAGCATTTCAATGCAGAA
AAGTACATAGAGCTGATAAGAAAACATGGTCTGGAGATTTCACAGCCTGGTTTGGATCCCAATAGAGGGTTGACATGGCAGATGACAAAAAGAAGAGGAA
ATAGCGAAGTGCATACAGAAACAGAGGAAAGGCCTGGCTGGTGCAGTGATCCCCATTTGCCACCATGTGCAGCCTTCGTTGAGATAATGGCGCCAGTGTT
TTCTCGTGATGCTTGGCGTTGCGTTTGGCATATGATTCAGAATGACTTGGTTCATGGATGGGGATTGGATTTTGCTCTAAGAAAATGTGTCGAGCCTGCA
CATGAGAAAATAGGTGTGGTGGACTCTCAGTGGATAGTGCATCAAGTTGTTCCTTCGCTTGGAAACCAGGGGCAGTCGGACAATGGTAAAGCACCATGGG
AAGGAGTTCGGGAGAGGTGCAGAAAAGAGTGGGCTATCTTTCAAGGTCGAATGGAGAATGCAGAGAAGGCGTATTTTGCAGAGATGGGGTTACCTCAACC
CAATATCTCGAAAGCACACTGAAGATTTGTTTACTTTCGTAGCTTTGTAGGAGAATTTTTGTTTAAGGGTGGAATCTGACTGGTGATTGTAGAATGTCAT
TTTTATGTAGTAATTTTTCATATAATTTAATCTCCCCTTTTTTTAATGATAAAGGCTCATCAGG