« Back to Amborella trichopoda search


Detailed information on CNT0022922


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B1LBM4|RL18_THESQ, E-value = 1e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 6e-13 (V. vinifera)
CNT0043075, E-value = 3e-12 (A. thaliana)
CNT0034678, E-value = 3e-12 (P. patens)
CNT0002061, E-value = 2e-09 (G. max)
CNT0028316, E-value = 1e-14 (O. sativa)
CNT0012080, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 3e-12 (S. moellendorffii)

Expression of CNT0022922

ERR364329: 22.154 RPKM

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MKHKEQTVRKCNPTSENKFLPRHSLSTPWRSLALNPLRPLSLSLSLSLSLSNLQARVHFAGRTQVPHLLLQTRIHLQAFIFFNKRRRWLSHHQLDLLEL*

>peptide 2 (114 aa)
MVIPPPVRPPRIIKYLKPYVLKMNFSNKYVSAQVFHTPTATVACSASTQEKLLRYSMQCTRDVEAAAKIGKILGDRLLLKDIPAVTVYLKGEQKYHGKIK
AIIDSLRDSGIKLI*

Sequence

>CNT0022922
ATGAAACACAAGGAGCAAACGGTGCGAAAATGTAATCCCACTTCGGAAAATAAGTTCCTCCCTCGTCACTCTCTCTCAACCCCCTGGCGTTCTCTCGCTC
TCAACCCCCTGCGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAACCTACAAGCGCGGGTCCATTTTGCAGGCCGTACACAAGTACCTCA
TCTTCTTCTTCAAACGAGGATCCATTTACAAGCTTTCATCTTCTTCAACAAGAGACGAAGATGGTTATCCCACCACCAGTTAGACCTCCTAGAATTATAA
AGTACCTGAAGCCCTATGTTCTAAAGATGAATTTCTCCAATAAATATGTGAGTGCCCAAGTTTTTCACACCCCAACTGCCACAGTCGCTTGTTCTGCAAG
CACTCAAGAGAAGTTGTTAAGGTATAGCATGCAATGCACTCGAGATGTTGAGGCTGCAGCCAAGATTGGTAAGATCCTTGGGGATCGGTTGTTGCTGAAA
GACATTCCTGCTGTCACTGTTTACTTGAAGGGGGAGCAAAAATACCATGGCAAAATAAAGGCCATTATAGATTCATTGAGAGATTCAGGTATAAAGCTAA
TCTGACTGAATTAGCCTGTTGTTCTTAGACATTCATTGTGGTGGTTTCTTGAGGGAAACACTTTAAAAGAGAAAAATGGTTTCTTAAGAATGTCTCTTGG
TTCAGGAAACTTTATTTTGTTCAATAGGAATTTGTTCTAGAACGGAATATTGGGAAATTAACAGGGTTGCTAATGCTCTGCTCTGCTCTTTATTGCTGCA
TAAAGATTCAAAACATAGGTTTAGGAAATCAGGGGAAGAAAAAAAGTTGGAGGTA