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Detailed information on CNT0023034


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SM23|ACBP1_ARATH, E-value = 7e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005713, E-value = 3e-10 (V. vinifera)
CNT0042889, E-value = 7e-11 (A. thaliana)
CNT0034678, E-value = 7e-11 (P. patens)
CNT0002061, E-value = 7e-08 (G. max)
CNT0028701, E-value = 1e-09 (O. sativa)
CNT0011121, E-value = 3e-07 (S. tuberosum)
CNT0038582, E-value = 3e-10 (S. moellendorffii)

Expression of CNT0023034

ERR364329: 2.688 RPKM

Peptides detected in this lncRNA

>peptide 1 (116 aa)
MQQQRASRDRSARSLPILHHHQMALVQGLRHQPFHLQSRCPSKSLGQVLQQLGIFPLFPEIQGLIRLLYPFQEIFWPNLGQIPAHLPFPQPNHRHFYRDL
LQKQTLRLILAVSRCN*

>peptide 2 (34 aa)
FDILNNPREMEFNKENRKYHFARAEILRAEGCDP*

Sequence

>CNT0023034
GCTTTGATATACTTAATAATCCAAGAGAGATGGAATTCAATAAGGAAAACAGAAAGTACCACTTTGCACGAGCAGAGATCTTGAGAGCTGAGGGTTGTGA
TCCATAGCAGGTTCCCTCTGTTGCAACTTTATGAAGACCATACAATTGCATTTGCACATCGCTCCCCACCCTTGATAGCAATTCATTACTCTCTGATTCG
ACAAATTTTGATGCAACAGCAAAGAGCTTCTCGAGATCGCTCCGCTCGATCCCTTCCCATTCTTCATCATCACCAAATGGCACTGGTTCAGGGTTTACGT
CACCAACCGTTTCATCTTCAGTCAAGGTGTCCGTCAAAGTCTCTAGGTCAAGTTCTTCAGCAACTAGGAATTTTCCCTCTCTTTCCAGAGATCCAAGGTC
TAATTCGTTTACTGTATCCTTTTCAGGAGATTTTTTGGCCAAATTTAGGGCAAATTCCTGCACATTTACCATTTCCTCAGCCAAATCATCGCCATTTTTA
TCGGGATTTGTTGCAGAAGCAGACTCTACGTTTGATCCTTGCAGTGTCGAGGTGTAATTAAGTTTAGAAGGCTCTTCCTCTGATAATATACGTGTGTTAG
GCTTAGAAGCATTCGACGGAGGGCTTGGATCATGTTCTCCATTAGAATCGGAGACGAGTTTTGCTATAAGAAAAGCGAGAACCAGGGAAATAAAGGCGGT
TATAAGAAGCTCCTGTAATATCTCCATGCTTACTATTCACAAAACAAACGCAGAGAGCGAATACCGGACTGTTTCAGAGAGAAACGCTTATTGAGATAGA
GAGAGAACCTCCTTGATCGAAGCAGGCAGAGAGAGAGAGAGAAACCTGGCAGCGAGAGAGTAATTCGGGTTGATTAGAAGCGCATAGAAAGAGAAAATGT
GTTTATTGAAGTAGGAAGACAGAGCCGATTGTAACGCAGAGAGAGAGAGAGAGAGAAGTTAATTCAAAGAGTGACTGAAATGAGAGACCCAAAAAGATGA
GGACGGGGGTCTAGAGAGAGAGAGAGAGAATTGAAGCAGAGAGAAAGTAGAGGTAAAACTGAGGTAGAGAGAGAGAGAATTGAAGCAGAGAGAAAGTAGA
GGTAAAACTGAGGTAGAGAGAGAGAGAATCACAGAGAGAGAAAGTAGAGGTAATTCAAAGAGTGATTGAAAGGAGATGCCCAAAAAAAGAGAGGAGGGGT
CTAGAGAGAGAGAAAGTCCGGGGTAATTCAAAGAGGGATTGAAAGGAGAGGCCCAGAAAAATGAGAGGAGTCTAGAGAGAGAAAGTCGAGTTAATTCAGA
GCCAAAAAGATGAGTGCAGGGTTGTAGAGAGAGAAACCGCAGAGACTTGCGTGAGGAGTTTAACACTCTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCGTCGAACAGGCAGAGGAGAGAGAAAGAGGAGGAGAGAGCGGGAATGGACCTTTGAGCTTGGCGGGTATATTCTTTGCATCAAGTTGGAGCCACGGC
ATCGATTTGAAGGACACTCG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ERN13375 hypothetical protein protein coding CNT0023034 788 276 CDS Cis