« Back to Amborella trichopoda search


Detailed information on CNT0023049


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-11 (V. vinifera)
CNT0042889, E-value = 4e-12 (A. thaliana)
CNT0034678, E-value = 1e-11 (P. patens)
CNT0019011, E-value = 2e-07 (Z. mays)
CNT0002061, E-value = 6e-08 (G. max)
CNT0028317, E-value = 6e-11 (O. sativa)
CNT0012080, E-value = 6e-08 (S. tuberosum)
CNT0039778, E-value = 9e-10 (S. moellendorffii)

Expression of CNT0023049

ERR364329: 13.514 RPKM

Peptides detected in this lncRNA

>peptide 1 (214 aa)
MNGSKTEILGHQPLASPAPPLMPSDEPGTNPDPPASSKHDHGDRALENSDLENNGEIGIERFDSEAVLEQEGAVSCVDRAAGLPDSVKVQKFAIFPPSDT
ESDCVLVEDLSNSMVGRETCGIGDELQKEGSSSESGKNVSDCSLLRAKTMLGESTSGAQAELPEEQTRSKSERRRHCTACGDQNAQIFDPKIPAKKQRSV
GVGAAARFPSTSSIP

Sequence

>CNT0023049
TTTAGGCAAAGAGTACGTCTGAGTTAGTGGGCCAGCAAAACCGGGCCGTAGATCGCCGAGAAAGAAGAGACACGCACGGACACTTGTTGCTGCCTGCAGT
TACAAACTTACGATGCACGCCGTTCCCTCCTACCTCCCTCCCTCTGAACCCACCCCTCCCTCTGCATAATACAAACAAATTCAATTCCCACCTCTCTCCG
TCTCTCTCTACTTTCTCTCTCTAAAAAAACACACTACCCCCTTCCTCTTTCTCTCCCAAAGCACACCTCTCCCTCTTAAGCGTCTCCATCCCTTCTCTCT
CTCTTCAGCAAGCTTCTCTTAATCTCTCTCTAACCTTCCCCACCGGAAAAGTCTTTCGTTTTCCGACTCTCCGTTCTCTCTTAAAGAAAACCGCTCTCTT
AGCTTCCTGTCCTCTCTCTCTAACTTTCGTCTCTCTCTCTCTCTGCAATTTCTACTGTGTAGGAAACTTACCTCTCTCTTTATCCATCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTATCTTTGAAGTGACCCCCTTTCTCATTTATACGATGACCTGACCGAAAAATTGCAGAAATGAACGGCTCCAAAACCGAAAT
TCTAGGGCATCAGCCCCTTGCTAGCCCCGCCCCCCCTCTGATGCCTAGTGATGAGCCGGGCACCAACCCTGACCCTCCTGCTTCCTCCAAACATGACCAT
GGCGACAGGGCCTTAGAGAACTCGGATCTGGAAAATAATGGTGAAATTGGCATAGAGAGATTCGATTCTGAGGCAGTTTTAGAGCAGGAAGGTGCAGTTT
CTTGCGTGGACCGAGCAGCTGGTTTGCCTGATTCAGTTAAAGTCCAGAAATTTGCGATTTTTCCCCCTAGTGATACTGAGAGCGATTGTGTTTTGGTGGA
GGATTTGAGTAACTCTATGGTAGGACGTGAAACGTGTGGAATTGGAGATGAATTGCAAAAGGAAGGAAGCTCTAGTGAGTCTGGGAAAAATGTTTCTGAC
TGCAGTTTGTTGAGAGCAAAAACTATGCTTGGTGAGTCAACATCTGGTGCACAGGCTGAGTTGCCTGAGGAGCAGACAAGATCTAAGAGTGAGAGACGGA
GACATTGTACTGCTTGTGGTGATCAAAACGCTCAAATATTTGATCCAAAGATCCCTGCAAAAAAGCAGCGGAGCGTTGGAGTTGGGGCAGCTGCACGGTT
TCCTTCAACATCTTCAATACCTT