« Back to Amborella trichopoda search


Detailed information on CNT0023067


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004997, E-value = 4e-08 (V. vinifera)
CNT0042067, E-value = 6e-07 (A. thaliana)
CNT0034528, E-value = 4e-08 (P. patens)
CNT0020809, E-value = 4e-08 (Z. mays)
CNT0031679, E-value = 4e-08 (O. sativa)

Expression of CNT0023067

ERR364329: 8.515 RPKM

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSERCRKNLRGSFSMIISKRLSLLSEHRVAKSKGLAASNCNNSV*

>peptide 2 (94 aa)
TVLTLIVPLDLYTLFFSLHPILSSSNLSLLLLLLLLLLITHQALDGSLYPFLLFSSHSLPLQSLSSSSSSNNPSSPKRKTPFSSASPKLATNQS*

>peptide 3 (35 aa)
MEDQENGSGFLQLTNQRAKKQYNQNHLIQLAKSPC*

>peptide 4 (31 aa)
MMGWKMEVGFETILDNLTLGLKPCERSSSSP*

>peptide 5 (70 aa)
YCPHSHRPAGSLYPFLLFASHSLLLQSLSSSSSSSSSSNNPSSPRRISIPFSSLFIPFSPPPISLFFFFF*

>peptide 6 (38 aa)
LLSSLSSSRWISIPFSSLCIPFSPPPISLFFFFFFFFF*

Sequence

>CNT0023067
CTACTGTCCTCACTCTCATCGTCCCGCTGGATCTCTATACCCTTTTCTTCTCTTTGCATCCCATTCTCTCCTCCTCCAATCTCTCTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTAATAACCCATCAAGCCCTAGACGGATCTCTATACCCTTTTCTTCTCTTTTCATCCCATTCTCTCCCCCTCCAATCTCTCTCTTCT
TCTTCTTCTTCTAATAACCCATCAAGCCCTAAACGAAAAACTCCTTTCTCTTCTGCTTCCCCAAAATTAGCCACAAATCAAAGCTGATTCCTTCCAAATA
TGGAAGATCAAGAAAATGGCTCAGGATTTCTTCAGTTAACAAATCAAAGAGCAAAGAAACAATACAATCAAAATCACCTAATTCAATTAGCTAAAAGCCC
TTGCTAAAGCTAGAGGCGTGTTGGTTGCAGTTGTCTATAGAGGAGGGAAACCTCATTTCTTTAAAGGCAGGTAAATCATGATAAAATAGAGGTATCTTAT
TGTAAATCTGATGAGCGAGAGATGTAGGAAAAACCTACGCGGATCCTTCTCAATGATCATATCAAAAAGGCTCTCATTGCTATCAGAGCATCGTGTGGCC
AAATCCAAAGGTCTAGCTGCAAGCAATTGCAACAACTCGGTTTGATGATGGGTTGGAAGATGGAAGTTGGATTCGAAACCATTCTCGATAATTTGACATT
AGGTCTGAAGCCCTGTGAGAGAAGCTCAAGCTCCCCATAAGCTCTATGTACAAAGCAGAAGTGTAATTTTCTACGGAAGAAACTTTTAGCGAGAAATTAT
CTGTATAAATTCATTGATGCGTGGGGTGTTACGAATGTAATAATGAGTGATCATTGTATTCTAAAGCACTACATTGGGGTTGTGAAAGTTTGTATCAATT
TGCAAACATGGGTGCT