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Detailed information on CNT0023279


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LK61|RR10_ARATH, E-value = 5e-69

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003560, E-value = 2e-13 (V. vinifera)
CNT0042615, E-value = 6e-26 (A. thaliana)
CNT0033040, E-value = 6e-26 (P. patens)
CNT0020781, E-value = 4e-24 (Z. mays)
CNT0000589, E-value = 6e-26 (G. max)
CNT0026995, E-value = 6e-26 (O. sativa)
CNT0008755, E-value = 8e-10 (S. tuberosum)
CNT0040165, E-value = 1e-17 (S. moellendorffii)

Expression of CNT0023279

ERR364329: 155.381 RPKM

Peptides detected in this lncRNA

>peptide 1 (209 aa)
MAASSLYLSFPPIQLCNSTNSSNPNPKATLSSNPCNLSLKLSLFSSRSLYRPRHLHKVCAAPELLDEEETLEPVPEEDAGRESTVLEVGSDISVPSPMAI
SADADKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHHRLIDILYPTAQTIDSLMQLDLP
AGVDVEVKL*

>peptide 2 (60 aa)
MLLRQPMRRPWDLFLSPQRREFIVFSNLHMFTKMLASILRSEHTTVSLIYSIQLLRPSIL*

>peptide 3 (40 aa)
TSKPISRFNPLVYLGHFQAHLPLTVTFCEHWLGIENANPF*

Sequence

>CNT0023279
CCACTTCCAAGCCCATCTCCCGTTTTAACCCGCTGGTTTACCTAGGCCACTTCCAAGCCCATCTCCCGTTAACTGTTACATTTTGCGAACACTGGTTGGG
AATTGAGAATGCGAATCCCTTTTAGTGATTTTAACCACGGGGAGGGGCCAATGAATTTCTCACTCCATCCCGCACCAATACTTTTATAAACCCTTTGAAA
TCATTTTGGATAAGTTGGAAAGGGCAGTGAGAGAGAGACAGTGTGTTTCTCTCACTAAACCTCATGGCTGCTTCTTCTCTATACCTCAGCTTTCCTCCCA
TTCAGCTCTGCAACTCTACGAACTCGTCAAACCCTAACCCTAAAGCTACCCTAAGCTCAAACCCCTGCAATCTCTCTCTAAAATTATCTTTGTTTTCTTC
CCGTTCTCTCTATCGTCCAAGACATTTGCACAAGGTTTGTGCAGCTCCAGAGCTCCTTGACGAAGAGGAAACCCTAGAACCAGTTCCAGAGGAAGATGCA
GGACGTGAATCAACTGTTTTAGAGGTTGGCTCTGATATCTCAGTTCCTTCTCCAATGGCGATAAGTGCAGATGCTGATAAGATGGCACCAAAACAAAAGA
TAAGAATCAAGCTTCGGTCTTATTGGGTTCCCTTAATTGAGGACTCATGCAAACAAATAATGGATGCTGCTAAGACAACCAATGCGAAGACCATGGGACC
TGTTCCTCTCCCCACAAAGAAGAGAATTTATTGTGTTCTCAAATCTCCACATGTTCACAAAGATGCTCGCTTCCATTTTGAGATCAGAACACACCACCGT
CTCATTGATATACTCTATCCAACTGCTCAGACCATCGATTCTTTAATGCAACTTGATCTCCCAGCTGGGGTTGATGTAGAGGTAAAGCTTTGATTATTAA
TTTTTCTTAGAAGTTACTCAGATTATATAGTCACTGTAGCGTTCTTGTAAACTATTTGATCACCCTAGTGCAGGAAGATAATTTTACTCGAGGATATTAT
GGTTTCACAATACATATATGCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA