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Detailed information on CNT0023382


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|A5V9P7|RS16_SPHWW, E-value = 8e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-11 (V. vinifera)
CNT0042889, E-value = 2e-16 (A. thaliana)
CNT0034678, E-value = 1e-11 (P. patens)
CNT0019000, E-value = 4e-11 (Z. mays)
CNT0002061, E-value = 2e-07 (G. max)
CNT0030844, E-value = 3e-15 (O. sativa)
CNT0012080, E-value = 4e-08 (S. tuberosum)
CNT0038582, E-value = 6e-10 (S. moellendorffii)

Expression of CNT0023382

ERR364329: 90.803 RPKM

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRLKPQLTLQAPHESLSSSHVCDYHLSLSLSLSLYLYLSLS*

>peptide 2 (37 aa)
KHKRELRSLQESLFRSLKCLSKFEDLQPCLLYTGVFL*

>peptide 3 (132 aa)
MVVRLRLSRFGCKNRPFYRIIVADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGMNFDRIKYWLSVGGQPSDPVQRILFRAGLLPPPPMLAMMHKGGPRDN
RVIDPLTGRPQPTTEPSHKDEAETPVDTSSSS*

Sequence

>CNT0023382
AAAACATAAAAGAGAGCTGAGGTCCTTGCAGGAGTCTCTCTTTCGATCTCTGAAGTGTCTGTCTAAATTCGAGGACCTGCAACCTTGCTTACTTTATACA
GGTGTTTTCTTATAGTAAGAAATGGTGGTGAGGCTGCGGTTATCAAGATTTGGATGCAAAAACAGGCCATTTTATCGAATAATTGTGGCTGATAGTAGGT
CACCCAGAGATGGAAAACACCTTGAAGTTTTAGGTTACTACAACCCACTACCAGGGCAGGATGGGGGTAAGCGCATGGGAATGAACTTTGATAGAATCAA
GTACTGGCTATCTGTTGGTGGTCAGCCATCTGACCCTGTGCAAAGGATTTTATTTAGAGCAGGTCTTCTGCCACCTCCTCCAATGCTCGCCATGATGCAT
AAAGGTGGGCCCCGTGACAACCGCGTCATTGACCCTTTGACTGGTCGCCCTCAACCCACCACTGAACCTTCTCACAAAGATGAGGCTGAAACCCCAGTTG
ACACTTCAAGCTCCTCATGAGAGCTTAAGTTCCAGTCATGTATGTGACTATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTATCTCTCTCTCT
CATAGGAACGGAAACGATATTTAATTTGTTGTTACTTCGCTTAATCAGCCAAATTTTGCTATAGTATTGAGTTGTTAGACAGTAGAAGGTATAATGATGT
GAGAGTTGTAATCTAAAAGACTCCTGGGAAGTTCTTATTGAATTCCTTATCCGTCCTTATGTGTCATTTTGTACTTACTGATAACTCCTAGCTTAGAGTA
AAATAATCAGTTCATGTGAGAGGTATCTCCTCTTAGATAAAGGAATGTATTTAGTTTTCTT