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Detailed information on CNT0023383


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007372, E-value = 7e-07 (V. vinifera)
CNT0043075, E-value = 2e-07 (A. thaliana)
CNT0035294, E-value = 7e-07 (P. patens)
CNT0017680, E-value = 3e-06 (Z. mays)
CNT0002798, E-value = 2e-07 (G. max)
CNT0031443, E-value = 2e-07 (O. sativa)
CNT0011121, E-value = 2e-07 (S. tuberosum)
CNT0039778, E-value = 7e-07 (S. moellendorffii)

Expression of CNT0023383

ERR364329: 54.131 RPKM

Peptides detected in this lncRNA

>peptide 1 (185 aa)
SLSLSLSLSEREDFVSLSSLVLQETMAKIFARPFFRESISSLYKSSSLSPTSRLMCFRPRSNSSRKEGLESSQLIEVDLEGGDAEVEILGFKKLEDAIHG
IIVRRSAPSWLPFLPGSSYWVPPRKKQLSVVELVGRLANPMTEEETMSFTTARGWPSSSYFIEDSSPHPVEGNSKKTPHSEEEEG*

>peptide 2 (48 aa)
MASSGWGFVQSRSGWHICGLPICSLSSRKKDLCNPSLCKSSSLLTSFV*

>peptide 3 (73 aa)
LSLSLSLSLKGRILFPSLLLFCKKQWRRSLLALFSENRSPLSTNPLLSRLLLASCAFVLAPTPPGRRVWNPRS*

>peptide 4 (32 aa)
MSILQFVGVAAFVEINDPMLLVLFYILNHSYV*

Sequence

>CNT0023383
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAAGGGAGGATTTTGTTTCCCTCTCTTCTCTTGTTTTGCAAGAAACAATGGCGAAGATCTTTGCTCGCCCT
TTTTTCAGAGAATCGATCTCCTCTCTCTACAAATCCTCTTCTCTCTCGCCTACTTCTCGCCTCATGTGCTTTCGTCCTCGCTCCAACTCCTCCAGGAAGG
AGGGTTTGGAATCCTCGCAGTTGATCGAGGTGGATTTGGAAGGAGGAGATGCGGAGGTTGAGATTTTAGGGTTTAAGAAGCTCGAAGATGCCATCCATGG
TATAATTGTAAGGAGATCTGCTCCCTCTTGGCTGCCTTTTCTTCCTGGTTCTTCATATTGGGTCCCACCGAGAAAGAAGCAGCTTAGTGTGGTCGAACTG
GTGGGTAGATTGGCCAATCCCATGACTGAGGAGGAAACCATGTCTTTTACAACAGCAAGAGGGTGGCCTTCTTCTTCTTACTTTATTGAAGATTCATCTC
CCCATCCTGTTGAAGGGAACTCAAAAAAGACTCCACACTCTGAGGAGGAAGAAGGATAAGTTGATGGTTGGGAAACTGCATTTTAAGCCCGTGGACTTGT
AGATACAATGGCAAGCAGTGGATGGGGGTTTGTACAGAGTAGATCTGGTTGGCATATATGCGGACTTCCCATCTGCTCTTTGAGCTCACGAAAGAAAGAC
TTATGTAATCCCTCTCTATGCAAATCTTCTTCCCTCTTGACATCCTTTGTGTAATCCCTATATACTTACGAAGAAAATTATAAAACAAAATAATGTTCTC
ATTATTGCTTCGGAAGGAGAAAAATGTCTATTTTACAATTTGTGGGCGTGGCTGCATTTGTGGAAATCAATGATCCAATGCTCCTGGTGCTATTCTATAT
ACTAAACCATAGTTATGTGTAGTGATGCGGTAAAAATGGG