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Detailed information on CNT0023427


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-12 (V. vinifera)
CNT0043075, E-value = 1e-12 (A. thaliana)
CNT0034678, E-value = 1e-12 (P. patens)
CNT0002061, E-value = 4e-09 (G. max)
CNT0031443, E-value = 7e-14 (O. sativa)
CNT0011121, E-value = 2e-08 (S. tuberosum)
CNT0038582, E-value = 1e-12 (S. moellendorffii)

Expression of CNT0023427

ERR364329: 2.672 RPKM

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MAMAMVMERVDGPAKGCRRGLMATCSSGLLHLLVNRGNGRIGSSPTMLLHFSLL*

>peptide 2 (40 aa)
MLTGNGYSTYWIKLISYVVGEHRKLYLKTHPLLFASLSFC*

>peptide 3 (120 aa)
MSFLKGLLSSGMLRKRLNLYNRIRGGDHGHGHGHGESRWTSQGMQERLNGYLFIRTPPPPGQSREWEDWELPYYVTAFLTVVILGIGLNAKPDLTLETWA
HNKAIERLDAQGISVPEDAN*

>peptide 4 (39 aa)
HLMKEEHLLHSRTSIVCNVNRKWIFYLLDKTYILCCRGT*

>peptide 5 (78 aa)
MVPLRLSSTFSLYSPLSVSLYLCLTLCFVLFYFLFGIVKEQFVYLSQFRVSESVKAWCNESPRKPRTTLRPLPPLIVT*

Sequence

>CNT0023427
CTCATCTTATGAAAGAAGAGCACTTGCTGCACTCAAGAACTTCAATTGTTTGTAATGTTAACCGGAAATGGATATTCTACCTATTGGATAAAACTTATAT
CTTATGTTGTAGGGGAACATAGAAAGCTTTACCTAAAAACACATCCTCTCTTGTTCGCGTCTCTCTCCTTTTGCTAACCCACCCTCTCAAGCTCCCTCGC
CCTTTAACGCCAACCTCGCTGCAAACTCTACACTCCCAAATCTCTCTCTCTCACCCGTTGCCCACTAGACCTAACCCACGAAACTATTTCTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAACAAACTATCTAGGATTTTCAAGCTTTGCATTTCAGCATCCTAGATAGGGTTTCGGAAGACGACAGCA
AAAGCGTTGTAGAGACAAAACGAGATCCCTTTCCAAGGATCCGAATGACCCCTAGAACGAAGAGATTTTTTCAGAACCATTGGAGGAGGAGGGTTCTTTT
AGAGAGAGAAAATGTCATTTCTTAAGGGATTATTGAGCTCAGGTATGCTTAGAAAGAGGCTGAATCTCTACAATCGCATCAGAGGAGGAGACCATGGCCA
TGGCCATGGTCATGGAGAGAGTAGATGGACCAGCCAAGGGATGCAGGAGAGGCTTAATGGCTACTTGTTCATCAGGACTCCTCCACCTCCTGGTCAATCG
AGGGAATGGGAGGATTGGGAGCTCCCCTACTATGTTACTGCATTTCTCACTGTTGTGATTCTTGGAATCGGGCTCAACGCCAAGCCTGATCTCACTCTCG
AGACCTGGGCTCACAATAAAGCCATAGAACGTCTTGACGCTCAGGGAATTTCTGTGCCTGAGGACGCAAATTGAAGCTCCTAATGGTACCCCTCCGTCTC
TCTAGCACTTTCTCTCTCTATAGCCCTCTCTCTGTCTCTCTCTATCTCTGTCTCACTCTTTGTTTTGTTTTGTTTTATTTTTTGTTTGGTATTGTGAAAG
AACAATTTGTGTACTTATCTCAATTTAGGGTTTCTGAGTCTGTTAAAGCTTGGTGCAATGAGTCCCCAAGAAAGCCCAGAACAACACTGAGGCCCTTGCC
ACCTCTGATCGTCACATAATTGATTCTCTCGCTCTGTTTCTTGCTTTCTTTGTAGATTTTTTTATTTCTATTTTTTTGGTGTAAGATTCATGTAATTCTA
GCGGTTCTGAGTTTTCAAGTTGGCTAGGATTTGGCATGGTGTCTGCCATGTTAATAAAGTTAAACTCCGGATCCACTTTATCTAGTCTGTCTTAGTGACA
GTTGCATCTTACATTGGTCCTATATTTGGCATAATGCAATGGATTCTGACTTATTTAATCATGGGGCTTGAAGACCTTTTTGATTCTTCC