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Detailed information on CNT0023435


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SI54|LSM7_ARATH, E-value = 4e-54

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 3e-12 (V. vinifera)
CNT0042615, E-value = 1e-11 (A. thaliana)
CNT0035175, E-value = 2e-13 (P. patens)
CNT0020781, E-value = 3e-12 (Z. mays)
CNT0002871, E-value = 1e-11 (G. max)
CNT0029752, E-value = 3e-12 (O. sativa)
CNT0008755, E-value = 6e-10 (S. tuberosum)
CNT0038248, E-value = 3e-12 (S. moellendorffii)

Expression of CNT0023435

ERR364329: 44.543 RPKM

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA*

>peptide 2 (85 aa)
KNPSPSREIKAAFLLLLCQLLPAFLRSDRASQGLLAQGFRLIRTWKYITLSRNPVDLGFRLMAFCSSLRERRAQREEKQASWCLC*

Sequence

>CNT0023435
AAAAAATCCCTCCCCGTCCCGTGAAATAAAAGCGGCGTTCCTTCTTTTGTTGTGTCAGTTGCTCCCTGCTTTCCTCCGATCGGATCGCGCAAGCCAAGGT
CTACTCGCGCAGGGTTTTAGACTCATCCGTACATGGAAATATATCACTCTCTCTAGAAATCCAGTGGACCTAGGGTTTCGTTTGATGGCCTTTTGTAGTT
CGTTAAGAGAGAGACGCGCTCAGAGGGAGGAAAAGCAGGCCTCGTGGTGTTTATGTTGATATTGCAACAACTTGTTATAAAACGGTAGCCACTCCAGAAA
ATGTCAGGTCGAAAGGAAACCGTTCTAGATTTGGCAAAGTTTGTTGACAAGGGTGTGCAAGTCAAACTCACAGGTGGAAGACAAGTAACAGGTACTCTGA
AAGGGTATGACCAGCTTCTGAACCTTGTGCTAGATGAAGCAATAGAGTTTCTGAGAGATCCGGATGATCCACTGAAGACAACAGATCAAACGAGGCCTCT
TGGTCTGATTGTTTGTAGGGGAACTGCTGTAATGCTAGTGTCCCCAACAGATGGGACAGATGAGATTTCCAACCCCTTTGTTCAACCTGATGGAGCTTAA
ATCTTGTGGCCACAATGAGTCCTTTTGAATTCTCACTAATGAGTTTGTCCAAGTAATCGATTATATGTGATTGACTAATCAACTTCTTCTCTTTTGTTCT
TGGACTCTCCTTTTATGCCTAAATTAGGATTGTCCAGGTGGTCCGTGGACCCGAGTGGGTGATCATGCTGCCTGGGCTAGGATGGTATCTGCATTCCTCT
CTCTAGGTTATAGAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGGTGGT