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Detailed information on CNT0002345


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93ZJ3|NFD6_ARATH, E-value = 5e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003301, E-value = 8e-09 (V. vinifera)
CNT0044073, E-value = 1e-07 (A. thaliana)
CNT0022971, E-value = 2e-09 (A. trichopoda)
CNT0008805, E-value = 5e-07 (S. tuberosum)

Expression of CNT0002345

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLPYHSATASALLNSMLSVSRHSYGWTPEGS*

>peptide 2 (47 aa)
MVGPLKGRDHLLFGFRLEDYPYGDCCFWVRCICAYFAWISVYFVRPA*

>peptide 3 (45 aa)
MSAASRSAGAANLAAGARPRLARSPFRLPKQTSISNRVFRLPTYR*

>peptide 4 (52 aa)
MVIAVFGCGASAHTLHGFQFTLLGLLRDFSPWLNMKPERLINCTSFQSWYLA*

Sequence

>CNT0002345
GAGAATCCAAACCCATAGCTCCTGAGCAAAATTAGGAGCAAACAAAAAAAATTGTAAAAAAGAAAAAGCAAAACCCCTTGGTACTGTTTCCTCATTCACG
ATGTCCGCCGCCTCCCGATCAGCCGGTGCGGCCAATCTGGCTGCCGGAGCTAGACCGAGACTGGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAA
TCTCCAATCGTGTTTTTAGGTTACCGACTTACCGGTAGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCCGCATTGCTG
AATTCGATGCTCTCTGTGTCTCGCCACTCTTATGGTTGGACCCCTGAAGGGTCGTGATCATTTGCTCTTTGGCTTTAGGCTTGAGGACTACCCATATGGT
GATTGCTGTTTTTGGGTGCGGTGCATCTGCGCATACTTTGCATGGATTTCAGTTTACTTTGTTAGGCCTGCTTAGAGATTTTTCTCCTTGGTTGAATATG
AAACCTGAAAGACTTATAAATTGTACGAGCTTCCAGAGCTGGTACCTTGCTTAGGTATGATGACTCTTTTAGAACATTATTGCAACATTTCCATTACTTG
ACGATTTACAATGATTTACTTCACCCTGTTCTTGGAAATGGTTTTACTCCAAGTATTAGCAAACATTACCAAATTTTAAATGTTACACGAGCATGTTTTA
G