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Detailed information on CNT0023452


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O48529|STR9_ARATH, E-value = 1e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006299, E-value = 1e-07 (V. vinifera)
CNT0030105, E-value = 1e-07 (O. sativa)

Expression of CNT0023452

ERR364329: 2.36 RPKM

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MSEPISNHVIMCPCLLKRRTMTLEHLILWEKLSYEMQARLASYHSRQNFSCIRHHPHLCISLHYFFSRTGG*

>peptide 2 (74 aa)
MRTNNMLKAQWIKKCSNVPCSIWLPRSVCVCERERESLIHQVHAPLDKYPIFRIFKKNYHSKEREREILLVIVN*

>peptide 3 (54 aa)
YLGWHSNTTMGGLRHVEVILKQKIVIRAEVDYVDGKEAKVVVSKEGYPKRYIPI*

>peptide 4 (47 aa)
MRCRQGWPRIIQGKISAALGTILICAYLSITFFPEQADKLFQLGPTS*

Sequence

>CNT0023452
GTTATCTTGGGTGGCATTCAAATACAACCATGGGCGGGTTGCGTCATGTGGAAGTTATTTTGAAGCAAAAAATAGTTATTAGAGCAGAAGTGGATTATGT
TGATGGTAAAGAGGCTAAAGTAGTGGTTTCAAAAGAGGGTTATCCTAAGAGATACATCCCAATATGAGTGAGCCCATATCAAATCATGTCATCATGTGCC
CCTGTCTATTGAAAAGAAGGACAATGACCTTGGAACATTTGATTCTGTGGGAAAAGTTGAGCTATGAGATGCAGGCAAGGCTGGCCTCGTATCATTCAAG
GCAAAATTTCAGCTGCATTAGGCACCATCCTCATCTGTGCATATCTCTCCATTACTTTTTTTCCCGAACAGGCGGATAAACTTTTTCAGTTGGGCCCTAC
TAGCTAGGACTCCACATAACAGAAAGAATATTAGAGAGGATTTGTTCTCATTCTTTGTGGCTTCATGAAATGATGATGAGCTACTAGTGCATGCGAACTA
ACAACATGTTGAAAGCACAGTGGATAAAGAAATGTTCCAATGTACCCTGCTCTATATGGCTGCCGAGGTCCGTGTGTGTGTGTGAGAGAGAGAGAGAGAG
TTTGATCCATCAAGTACATGCTCCATTGGATAAATATCCTATATTTAGGATATTTAAAAAAAATTACCATTCAAAAGAGAGAGAGAGAGAGATTTTGTTG
GTAATTGTAAATTGAAGTTTCCTCTGGAGTACATATATTTTTTTGCCTAGTTTGGCTCCAAAATCCAAACTCAAACAAACACTGGCA