Detailed information on CNT0023466


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6AWT8|GG3_ARATH, E-value = 1e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 9e-11 (V. vinifera)
CNT0042889, E-value = 9e-11 (A. thaliana)
CNT0033726, E-value = 4e-13 (P. patens)
CNT0017680, E-value = 1e-06 (Z. mays)
CNT0002061, E-value = 8e-08 (G. max)
CNT0030844, E-value = 1e-12 (O. sativa)
CNT0011121, E-value = 3e-07 (S. tuberosum)
CNT0039778, E-value = 9e-11 (S. moellendorffii)

Expression of CNT0023466

ERR364329: 2.504 RPKM

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MDNKPTARNHGEDLNECIDMLTKNSYQSRRGSLAEKTLNFTISFLLPFISFRALIFNRKTSFPASSSPESGGSAIFFR*

>peptide 2 (29 aa)
MVLYKGSRLFFTFLFIQIKQSKSENFISL*

>peptide 3 (66 aa)
MLFLLCLFFLQMYMHIFLPKLLVMLKKLSLSLSLSLSLPLMLLIFQTLFCLFFYYYELLLYRSCII*

>peptide 4 (52 aa)
PVRLLVFNDLPPVFTANTSNKLISFRERKKRGSNCKRGKVGERKTGKLQREK*

>peptide 5 (40 aa)
MLPLLLRLLHFLLCLCLLQELHRVILIYMEGIGSRPSYKT*

>peptide 6 (56 aa)
MARGVLKWQEREEERDITREPEKGEWEGREKCGERIREEREMTKRKRSASASQRKG*

>peptide 7 (29 aa)
MARERGRERYNKRTREGRMGGEREMRREN*

>peptide 8 (63 aa)
PPYASLFLMISRLSLLPTLQTNSFLLERERKEGVIASGGRLERERQGNCRERNRDEREIARKT*

>peptide 9 (180 aa)
MVAADAASSSSSPSFSSLPLPSPRTPPSYPDLYGRYRKQAELQNLDREITYLQEELRSLESLPPASICCKEVDDFVGINPDPMIPINHKVRRSYRIWKIF
RVCSCFNFSWICCCKGCSIRLEKPRCLCKAVKKPRCLCRLPSCRSCCKVPSLPRPKCSSCCACSFSKCTCIFSCPNCWLC*

Sequence

>CNT0023466
CCCCCGTACGCCTCCTTGTTTTTAATGATCTCCCGCCTGTCTTTACTGCCAACACTTCAAACAAACTCATTTCTTTTAGAGAGAGAAAGAAAAGAGGGAG
TAATTGCAAGCGGGGGAAGGTTGGAGAGAGAAAGACAGGGAAATTGCAGAGAGAGAAATAGAGACGAGAGAGAAATTGCAAGAAAGACTTAGAGAAAGTT
AAAACAAACCCATTTTTAGAGAGAGAAAGAAAATAGGGAGTAATTGAAAGGGGGAAATCTTTGAGAGAGAAATTGCAGAGAGAGAATTAGAGAAGAGAGA
GAAATTGCAGAGATACTTAGAGAAGAGAGAGAAATTGCAGAGATAATTAGAGAAGAGAGAGAACTTGCAAGCGAGAATTAGAGAAGAGAGAGAAGTGAAA
CACAGGAGAGCATTTAGAGATGAGAGAGAAATGGCGAGAGGGGTTTTGAAATGGCAAGAGAGAGAGGAAGAGAGAGATATAACAAGAGAACCAGAGAAGG
GAGAATGGGAGGGGAGAGAGAAATGCGGAGAGAGAATTAGAGAAGAGAGAGAAATGACAAAGAGGAAAAGAAGCGCGAGCGCTTCCCAGAGAAAGGGATA
AATAGAGAGAGAAAGAGGGAGTGGAGAGAGAGGTACTGGTCATGGTTTTGTACAAAGGTAGCAGGCTTTTTTTTACCTTCCTCTTTATACAGATAAAGCA
GAGTAAGAGCGAGAATTTCATCTCTCTCTAAAAACAGCTTGAATCTCATCATTCTCACTCTATATAAGAGCGAGAATCACGTCATTCTCTCTCTTCTCTT
TTCACCTATATGGACAACAAACCTACGGCTCGCAATCACGGTGAAGATTTAAATGAGTGCATTGATATGCTGACCAAGAACAGTTATCAGAGCAGGCGTG
GCAGCCTTGCAGAGAAAACCCTAAATTTTACGATAAGCTTTCTCCTCCCTTTTATCTCTTTCCGTGCCCTAATTTTTAATCGGAAAACGTCATTTCCGGC
CTCTTCATCACCGGAATCAGGTGGCTCGGCGATTTTTTTCAGGTGAATTTTGATCTTTCATTGGTGAATTTTAGCAGAAAGAGTAATGGTGGCCGCTGAT
GCTGCCTCTTCTTCTTCGTCTCCTTCATTTTCTTCTTTGCCTTTGCCTTCTCCAAGAACTCCACCGAGTTATCCTGATTTATATGGAAGGTATCGGAAGC
AGGCCGAGCTACAAAACCTAGATCGAGAAATAACGTATTTGCAGGAGGAGTTACGGTCACTTGAAAGCCTTCCACCTGCTTCTATTTGCTGCAAAGAGGT
TGATGACTTCGTGGGGATAAATCCTGATCCAATGATACCTATAAATCACAAAGTTCGTAGATCATACCGTATCTGGAAGATATTTAGAGTCTGTTCCTGT
TTCAACTTTTCATGGATTTGCTGTTGCAAAGGGTGCTCGATTCGCCTGGAAAAACCTCGCTGCCTTTGTAAAGCAGTGAAGAAGCCAAGATGTTTATGTC
GATTGCCATCTTGTCGATCTTGTTGTAAGGTTCCTTCTCTTCCTCGCCCCAAATGCTCTTCTTGCTGTGCTTGTTCTTTCTCCAAATGTACATGCATATT
TTCTTGCCCAAATTGTTGGTTATGCTAAAGAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCATGTTACTTATATTCCAAACACTCTTTT
GCTTATTCTTTTATTACTATGAACTGCTCTTGTATAGATCTTGCATAATCTAGTTTTCCATCAGTTATTCCCTTGTAATGTACTTGTGCCATTCCATGAA
TAACAAGAGCCTTATCAGAGACTTTTTGAACAGTCATAGACCCTCACAGTCAAG