Detailed information on CNT0023603


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L586|Y4958_ARATH, E-value = 1e-132

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 2e-15 (V. vinifera)
CNT0042546, E-value = 3e-17 (A. thaliana)
CNT0034678, E-value = 3e-14 (P. patens)
CNT0002061, E-value = 1e-07 (G. max)
CNT0031800, E-value = 5e-16 (O. sativa)
CNT0011127, E-value = 3e-23 (S. tuberosum)
CNT0038582, E-value = 3e-14 (S. moellendorffii)

Expression of CNT0023603

ERR364329: 21.795 RPKM

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MWHLQLLIYLFIFSLLQHCLDLFLLPTSLSGLALHLGI*

>peptide 2 (35 aa)
MLGGKGMKRVPKKHPQIRSPLVGNQRGGFHCLNGN*

>peptide 3 (43 aa)
MVAFLSEALNCRNWFWGVPIFTNEIWEILDTMFLMVGRAHNEG*

>peptide 4 (139 aa)
LSLEAINFALDHHHHRLSLLPNSNPDSRLKSSFRLLSQVSRTSLSVIRRRVPVLWLLTGDGLIILDPNLCLYTISIHNAVIYLNSRSLILFKPQEMLLFM
RCHKYPIHHLSENSVSISLSIHGALVSSHLNFSDHVLEG*

>peptide 5 (56 aa)
MNEAIPFFPSDHEKVFYWMELVTCGSEFLSIYEGTEPSALINAALGLTQDNFHWYT*

>peptide 6 (295 aa)
MKVKASWSSSYLPNNLTMAAPRIVITDVGRQRDEESAKETPTNKKPFSGKPEGRFPLSQWELAAALSVVLLFTMGLFCIYLTMPHAEYDKILRLPRNLSD
LRVLKDHLATYAKDYQAQFMLGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGVALVVFTATTGASSCYFLSKLIGRPLVFWLWPEKLRFFQAEIAKRR
EKLLNYMLFLRITPTLPNTFINVASPIVDIPFHIFFTATLFGLIPASYITVRAGLALGDLRSVKDLYDFKTLAVLFLIGSVSIFPTILKKKRTYE*

>peptide 7 (49 aa)
MLNMIRFLGCPAIFRISESSKITLQHMLRIIKHNLCLVTVLHTYSCKHL*

>peptide 8 (29 aa)
MRAFQMNPERIIDVNIFIHPKNLHTYRMWV

>peptide 9 (62 aa)
MFLIWDKCTIAPTIVILSLGNSSSSHFLGIHVLDTAGMLVHFHVWCMHTHSPFHVFPCVLSR*

Sequence

>CNT0023603
GCTCTCCCTTGAGGCTATAAATTTCGCACTGGACCATCATCATCATCGTCTCTCTCTCCTTCCAAATTCAAATCCAGATTCACGATTAAAATCGAGCTTC
AGGCTACTCTCACAAGTCTCAAGAACCTCTCTCTCCGTCATCAGGCGTCGGGTTCCGGTGTTGTGGCTCCTCACTGGCGATGGACTCATCATTTTAGACC
CTAATCTCTGTCTGTATACAATTTCCATACACAACGCCGTTATATATCTAAACTCTAGATCTCTCATCCTTTTCAAACCCCAAGAAATGCTCCTCTTTAT
GCGGTGCCATAAATACCCAATTCATCATCTATCTGAAAACTCTGTATCCATTTCTCTCTCTATTCATGGTGCTCTAGTTTCTTCACACCTCAATTTTTCT
GATCATGTATTAGAGGGATAATAAGTATTTCACCCATTGTTCTTTTCTCTCTCTCTATTTACGTTTTTGTATAATCTTGTATCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTTGTTTGCTTGGTGTCTTCATTTGTATTGATTCCTTCTGAAGTAACATTTGCAAAGTACCAATTCTCTATCGAGGGA
ATATTGGGGTCCTTGAATTAGGTTTTTGGTATCTGCTGGTCGGGATTCTATTGGCCAAGGTTCGATGGATTCAATCCAATGAATCACTTATGATACCTTC
TTTTGCTTTAAAAAATCAATGGTAGCCTTCTTATCAGAAGCACTAAATTGCAGAAACTGGTTTTGGGGTGTTCCAATATTCACAAATGAGATTTGGGAAA
TCCTTGATACCATGTTTTTAATGGTGGGTAGGGCTCACAATGAAGGTTAAGGCATCCTGGTCCTCATCGTACCTTCCAAACAATCTAACAATGGCAGCTC
CAAGAATTGTGATCACTGATGTTGGGAGGCAAAGGGATGAAGAGAGTGCCAAAGAAACACCCACAAATAAGAAGCCCTTTAGTGGGAAACCAGAGGGGAG
GTTTCCATTGTCTCAATGGGAATTAGCAGCTGCTTTGAGTGTGGTTTTGCTCTTTACCATGGGTTTATTTTGCATCTACTTAACCATGCCTCATGCTGAA
TATGATAAGATTCTTAGGTTGCCCCGCAATCTTTCGGATCTCCGAGTCCTCAAAGATCACCTTGCAACATATGCTAAGGATTATCAAGCACAATTTATGC
TTGGTTACTGTTCTACATACATATTCATGCAAACATTTATGATTCCTGGCACCATATTTATGTCGTTGCTGGCTGGAGCCCTTTTCGGTGTCATACGAGG
TGTTGCTTTAGTTGTTTTCACTGCAACTACTGGGGCCTCATCCTGTTATTTTCTGTCCAAGTTAATAGGCAGGCCTCTCGTTTTCTGGTTATGGCCTGAG
AAATTGAGATTTTTCCAGGCTGAGATTGCAAAGCGCAGAGAAAAGCTGCTTAATTATATGCTCTTTTTGAGGATAACACCCACTTTGCCTAACACATTTA
TCAATGTGGCATCTCCAATTGTTGATATACCTTTTCATATTTTCTTTACTGCAACACTGTTTGGACTTATTCCTGCTTCCTACATCACTGTCAGGGCTGG
CCTTGCACTTGGGGATCTGAGATCCGTCAAGGATCTCTACGATTTTAAGACTCTTGCTGTCCTGTTTCTTATCGGCTCTGTATCCATATTCCCGACCATT
CTGAAAAAGAAGCGGACATATGAATGAAGCCATACCTTTCTTCCCTTCTGACCATGAGAAAGTGTTTTATTGGATGGAATTAGTTACATGTGGGAGTGAG
TTCCTCTCAATCTATGAAGGTACTGAACCAAGTGCCTTAATCAACGCAGCTTTAGGATTGACTCAAGATAATTTTCACTGGTATACATAATGGTTTTCTT
TTTCTTCCGCTGTTATCCTTTTATGTTTCTTCCTCTTTGGTAGTTCTTACGGAAGGATGAACTAATTGTTGCAATTTTTTGTATGGTTTCTTTCTGTGCC
CTATTGGGCTTTATTTAGCTGTAATCTTGAGGATAGGTAACAAATTGATGTTTCTTATTTGGGACAAGTGTACAATAGCCCCTACCATAGTCATATTGTC
TCTTGGGAATTCTTCATCATCACATTTTCTTGGAATACATGTTTTAGATACCGCTGGCATGCTTGTGCACTTCCATGTGTGGTGCATGCACACACACAGT
CCTTTTCATGTTTTTCCATGCGTGCTTTCCAGATGAACCCTGAAAGAATCATTGATGTCAATATTTTTATTCACCCAAAAAATCTCCATACTTATCGAAT
GTGGGTGGG