Detailed information on CNT0023666


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8RWF4|NIPA8_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000893, E-value = 2e-11 (G. max)
CNT0008534, E-value = 1e-22 (S. tuberosum)

Expression of CNT0023666

ERR364329: 2.17 RPKM

Peptides detected in this lncRNA

>peptide 1 (54 aa)
PNHLQLCVIEQFLLPYAVAGRDIYKYRERNLEREALFLILSLSRSSLMHCTQLI*

>peptide 2 (29 aa)
MCVIIVFTKMKFFGTHCVFGSQWSTMGTI*

>peptide 3 (38 aa)
MTSNLIGPCYCLSHMLLFLAHLAHTQYYLQSHYQTCCD*

>peptide 4 (63 aa)
MQRSHFLQRWGQFSLYQMLHLLTLFWTQKLQQRSCLLLSSLFSGIYSLLPLAITNHLFTLLSS*

>peptide 5 (439 aa)
MGDWIIGAVINLIGSIGINFGTNLLKLGHNQREKLAILQSSGNGGKVILKPIIYFRTWQFGLLFFALGNCLNFISFGYAAQSLLAALGSVQFVSNVAFAY
FVLDTKVTTKVMLATVFIVLGNIFLVAFGNHQSPVYTPEQLVEKFSNLIFLLYCLGLILVIVFNHLIYRRGELLLSSAGHDLKPYWPLLLPFSYAIVSGA
LGSYSVLFAKSLSNLLRLTMSSHYEFHSWFTYSMLLFFLSTAGFWMTRLNEGLALFDAILIVPMFQIAWTFFSICTGFIYFQEYQVFNSLRTTMFILGMV
SVFTGISLLAPEDSKGHETKNALPITSQPSSFTTDLSRSLNLIEKDVRDPKSLGHAVLTRARTFTIKARAACTLSLGLGEDQIGASSVLTMPMLSSRMTT
SFRGSDLDQEKFLSLRNTGSAKGLIEEDGKEMETTSLLM*

>peptide 6 (40 aa)
MRDWHFLMQYLLSQCFKLLGPSSPFVQALYTSKNIRFSIH*

Sequence

>CNT0023666
ACCAAACCATCTGCAACTGTGCGTGATTGAGCAATTCCTCCTTCCATATGCGGTTGCAGGGAGAGATATATATAAATATAGAGAGAGAAATTTAGAGAGA
GAAGCGCTCTTTTTAATACTCTCTCTCTCTCGCTCTTCATTGATGCATTGCACTCAATTGATTTAGTTCTATCATCATTCATCCAGCTTAAGACCCCAGT
AAGTGAGCCTTTAGTTTGATGTCTTGGGAGCTCGATAACTTCTCATGGGTGGAGTGGATATCAATTGCATATAGAGGAACTTCTATGAACGTTTAAATGG
GAGATTGGATAATTGGTGCTGTCATCAATCTTATTGGCAGTATCGGCATTAATTTTGGGACAAACCTTTTGAAACTGGGTCATAACCAGAGAGAGAAACT
AGCAATTCTGCAAAGCTCTGGGAATGGAGGAAAGGTTATCTTGAAGCCAATTATTTATTTCCGGACTTGGCAATTTGGTCTGCTGTTTTTTGCACTGGGG
AACTGTCTGAACTTCATTTCCTTTGGATATGCAGCGCAGTCACTTCTTGCAGCGTTGGGGTCAGTTCAGTTTGTATCAAATGTTGCATTTGCTTACTTTG
TTCTGGACACAAAAGTTACAACAAAGGTCATGCTTGCTACTGTCTTCATTGTTCTCGGGAATATATTCCTTGTTGCCTTTGGCAATCACCAATCACCTGT
TTACACTCCTGAGCAGCTAGTGGAGAAATTTAGCAATCTGATATTCCTTCTTTATTGCCTTGGCCTGATCTTGGTTATTGTTTTTAATCACTTAATATAT
AGGCGAGGTGAGCTTCTACTTTCATCTGCTGGGCATGACCTCAAACCTTATTGGCCCTTGCTATTGCCTTTCTCATATGCTATTGTTTCTGGCGCACTTG
GCTCATACTCAGTATTATTTGCAAAGTCATTATCAAACTTGCTGCGATTGACTATGAGCAGCCATTATGAATTTCATAGTTGGTTCACTTACTCCATGCT
CTTGTTCTTCCTGAGCACAGCTGGTTTTTGGATGACGAGATTGAATGAGGGACTGGCACTTTTTGATGCAATACTTATTGTCCCAATGTTTCAAATTGCT
TGGACCTTCTTCTCCATTTGTACAGGCTTTATATACTTCCAAGAATATCAGGTTTTCAATTCATTGAGGACAACGATGTTTATACTTGGCATGGTTTCAG
TCTTTACTGGAATTTCCTTGTTAGCACCTGAGGATTCCAAGGGCCATGAAACAAAGAATGCTCTTCCTATAACATCTCAACCTTCAAGCTTTACAACTGA
TCTCAGCAGGTCCCTCAATTTAATTGAAAAAGACGTAAGAGACCCAAAATCACTAGGACATGCTGTGCTCACAAGGGCAAGAACCTTCACTATCAAAGCG
AGGGCTGCTTGTACATTGTCCTTAGGCTTAGGCGAGGATCAGATCGGCGCTTCATCGGTTCTTACAATGCCCATGCTATCTTCTCGGATGACAACAAGTT
TCAGAGGAAGTGATTTGGACCAAGAGAAATTCTTGTCCTTGAGAAACACTGGTTCGGCTAAGGGCTTGATAGAAGAGGATGGAAAAGAGATGGAGACCAC
TTCTTTGCTTATGTAAAACCATAGGGGCGACTGCATGATATGAAAAGAAGTTGTACTTAAGAGTAAAGCATTCAATACTAGTTATCTGATTCTTTTTTTC
TTTAAATTGCATTTGAGATGTGTGTAATTATTGTATTTACCAAGATGAAGTTCTTTGGGACCCATTGTGTTTTTGGATCGCAATGGTCGACCATGGGTAC
CATCTAACGTTGCACCTATCCGTTTTGAAGAAAACTTGAAAATTCTTATGTTTGAACATCTTTTCTGTAAAGATCTCATTGCA