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Detailed information on CNT0023676


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P53750|YN93_YEAST, E-value = 3e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005469, E-value = 1e-06 (V. vinifera)
CNT0043837, E-value = 4e-06 (A. thaliana)
CNT0033155, E-value = 3e-07 (P. patens)
CNT0002397, E-value = 4e-06 (G. max)
CNT0031808, E-value = 3e-10 (O. sativa)
CNT0013487, E-value = 3e-16 (S. tuberosum)
CNT0039778, E-value = 4e-06 (S. moellendorffii)

Expression of CNT0023676

ERR364329: 29.62 RPKM

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SLSLSLSLSSASPSSPWKVSSHLLFHFCLLFPSLIILPSIHPFTFLLRDFGTS*

>peptide 2 (46 aa)
MVSHHRHTLIEKLFLSLLLTIMSLLLIGLDLDFQTSLNQNMVLITL*

>peptide 3 (412 aa)
LSLSLSLSLLCIPLIAMEGVISSTFSLLSPFPLINHTAKYSSLHISPSRFRNILAKRCNFNTRATGEEDEGYLIDAPVSVGDGFSFSGGKYSDAPSLSDE
WFKQGKIVKAHPVLGTGEKAKDPIFGLTMGVGSQASSDVFRWFSVESGRTGKHLVILIHGFPSQAYSYRKVIPILAVDYHVVAFDWLGFGFSDKPQPKYG
FDYTLNAEYVDSLDSLLSEFVAGNVSLVVQGYFAPVVVKYVYSHQENVKNLILVNPPLTDKHAKLPSTLSSFSNFLLGEIFSQDPLRASDKPLTNCGPYA
MKEEDAMVYRRPYLTSGSSGFALTALSRSMKKELKAYVEETRRILSSQTWMVNTTICWGRRDRWLSYDGVQDFCNLSNHKLVELPMAGHHAQEDCGEELG
GIIAGLLRNKRT*

>peptide 4 (82 aa)
MLLFLSVMVSLLAEESIRMRRASQMNGLSKGRLLKLILFLALVRRQRIRYLVLQWVWVLRPLLMFSDGSLLRVEERASIWLY*

>peptide 5 (33 aa)
LSLSLSLSPLHPPHRHGRCHLIYFFTSVSFSPH*

>peptide 6 (61 aa)
MMEFKTFATFQTINWWNFQWLVIMLKRIVGKNLVGSLLAFFATREPKLGIRLGLEWLAADS*

>peptide 7 (31 aa)
MPNCHRPCHHSAIFCWVKSFPRILLERVISP*

Sequence

>CNT0023676
CTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTGCATCCCCCTCATCGCCATGGAAGGTGTCATCTCATCTACTTTTTCACTTCTGTCTCCTTTTCCCCTCA
TTAATCATACTGCCAAGTATTCATCCCTTCACATTTCTCCTTCGAGATTTCGGAACATCTTAGCAAAAAGATGCAACTTCAATACAAGGGCAACTGGAGA
AGAAGATGAGGGATACTTGATAGATGCTCCTGTTTCTGTCGGTGATGGTTTCTCTTTTAGCGGAGGAAAGTATTCGGATGCGCCGAGCCTCTCAGATGAA
TGGTTTAAGCAAGGGAAGATTGTTAAAGCTCATCCTGTTCTTGGCACTGGTGAGAAGGCAAAGGATCCGATATTTGGTCTTACAATGGGTGTGGGTTCTC
AGGCCTCTTCTGATGTTTTCAGATGGTTCTCTGTTGAGAGTGGAAGAACGGGCAAGCATCTGGTTATATTGATTCATGGTTTCCCATCACAGGCATACTC
TTATCGAAAAGTTATTCCTATCCTTGCTGTTGACTATCATGTCGTTGCTTTTGATTGGCTTGGATTTGGATTTTCAGACAAGCCTCAACCAAAATATGGT
TTTGATTACACTTTGAATGCAGAATATGTTGATTCACTGGATTCTCTTCTAAGTGAATTTGTTGCAGGTAATGTTTCACTGGTCGTCCAGGGATACTTTG
CTCCAGTTGTTGTCAAATATGTTTATTCCCATCAAGAAAATGTGAAGAATCTCATACTTGTTAATCCTCCGCTGACAGATAAACATGCCAAATTGCCATC
GACCTTGTCATCATTCAGCAATTTTTTGTTGGGTGAAATCTTTTCCCAGGATCCTCTTAGAGCGAGTGATAAGCCCTTGACCAACTGTGGGCCTTATGCA
ATGAAAGAAGAGGATGCTATGGTTTACAGGAGACCTTACCTTACATCCGGTTCTTCTGGTTTTGCACTAACTGCATTAAGTAGGTCCATGAAGAAGGAGT
TGAAGGCCTATGTTGAAGAAACGAGAAGAATATTATCAAGCCAAACATGGATGGTTAATACAACAATATGTTGGGGTAGGCGTGACCGATGGTTGAGTTA
TGATGGAGTTCAAGACTTTTGCAACCTTTCAAACCATAAACTGGTGGAACTTCCAATGGCTGGTCATCATGCTCAAGAGGATTGTGGGGAAGAACTTGGT
GGGATCATTGCTGGCCTTCTTCGCAACAAGAGAACCTAAGCTAGGAATCAGGCTTGGGCTTGAGTGGTTAGCCGCTGACAGTTAGCAGCGATATCTCAAG
TTCGATTCCTACTGCTAAACTACCCAAAAAAACCAAAAAAAAAAAAAAAGGAGAGCATAAGCTGTTGTGTTATCTGCTTTGCCAGACAGTGAAAGGAGTA
TTATGAAAATATGTGAAGCAGGCCTTTTTGGGTGACTGAACCAGGCCGATATTGACATATTGTGTTTGATGTATAAGATTTTATATTTGAACCCTTGGAG
AAATCTTTGATTGATTGTAATTAGTTTGTTTGTTGGTTGCATTTTCTTCCCATCTCAAAAGAACCGTATATCTTCCCTGAAAATGAAATTTGCATGCATA
TTGGC