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Detailed information on CNT0023835


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 8e-15 (V. vinifera)
CNT0042889, E-value = 1e-19 (A. thaliana)
CNT0033726, E-value = 1e-13 (P. patens)
CNT0019000, E-value = 5e-07 (Z. mays)
CNT0002061, E-value = 3e-08 (G. max)
CNT0031676, E-value = 8e-15 (O. sativa)
CNT0011121, E-value = 3e-08 (S. tuberosum)
CNT0038582, E-value = 3e-11 (S. moellendorffii)

Expression of CNT0023835

ERR364329: 20.379 RPKM

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RKDYDLRVGGAVVVRERRTWASSLSPCVSLSSILPALPPAFSV*

>peptide 2 (147 aa)
VRITIYEWGELWSLERDERGRPLSLLAFLSHQFYPPFLLLSLSNTNLSLSTASLPLSLYTRAKKKADESSFRFSVVRPQFSPHSCLRSNRHARSLFKPHS
LSLSLSLSLPLSVSVSVSVCLCLSLNLHFEISSFAGLYVISFLILFI*

Sequence

>CNT0023835
CGTAAGGATTACGATTTACGAGTGGGGGGAGCTGTGGTCGTTAGAGAGAGACGAACGTGGGCGTCCTCTCTCTCTCCTTGCGTTTCTCTCTCATCAATTC
TACCCGCCCTTCCTCCTGCTTTCTCTGTCTAATACCAATCTTTCGCTCTCTACTGCCTCTCTCCCTCTCTCTCTCTACACAAGAGCTAAGAAGAAGGCGG
ACGAATCCAGTTTCCGATTCAGTGTGGTGCGCCCACAATTCTCGCCCCACTCCTGCCTCCGCTCCAACCGCCACGCTCGCTCCCTATTTAAACCCCATTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTGTCTCTGTCTCTGTCTCTGTCTGTCTCTGTCTCTCTCTAAATCTACACTTTGAAATCTCATCA
TTTGCAGGCTTATATGTCATTTCATTCCTGATCTTATTTATCTGAAAATCCCTAACTTTCTCACTCTCAGATTATTTGGGGCCAAAATTGAAGGGCATCT
GCGCGTTTTGGCCCTGATCTTACCCAAAAACCCTAACTTTATCTCGCTACTCAATTGTAACGGGTTCCAAGCTTGCTGCATATTTTTCCACTGTTGCTGA
GATTCATCTGCTTGCATGGAAACTAATTTTTGACTTAAAAGGCCAAC