Detailed information on CNT0023953


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q96329|ACOX4_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 3e-14 (V. vinifera)
CNT0042889, E-value = 4e-35 (A. thaliana)
CNT0034678, E-value = 5e-13 (P. patens)
CNT0002061, E-value = 3e-08 (G. max)
CNT0031676, E-value = 4e-26 (O. sativa)
CNT0009344, E-value = 3e-08 (S. tuberosum)
CNT0038582, E-value = 5e-13 (S. moellendorffii)

Expression of CNT0023953

ERR364329: 39.979 RPKM

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVCANSFSGIQQFIKMYMRDQLFIYGCCFYKVTTLKSNNPIQA

>peptide 2 (428 aa)
MPGKDMTSKIGMPPLDVSIAFPQATSASVFPPSVSDYYQFDDLLTPEERTIRRYVRKLVEKEIAPEMVKFWEKAEFPFHLVPKLAALRIAGGTIKGYGCP
GLSITASALAIAEVARVDASCSTFILVHSSLAMLTIALCGSEDQKHKYLPSLARFDTIACWALTEPDYGSDASSLSTTATKVPGGWLLDGQKRWIGNSTF
ADVLVVFARNMSTNQINGYIVKKGTAGLKVSKIENKIGLRIVQNGDILLQKVFVPDEDWLPGVNSFKDTSKVLAVSRVMVAWQPIGIAMGVYDMCHRYLQ
ERKQFGVPLASFQINQEKLVRMLGNIQGMFLVGWRLCKLYETEKMTPGHASLGKAWTSLKARETVSLARELLGGNGIVADFLVAKAFCDLEPIFSYEGTY
EINSLVTGREITGIASFKPAAVARRSSL*

>peptide 3 (36 aa)
MRYGSINPLSLSLPLLYTQLKRTSSVEGLVTFGLVV*

>peptide 4 (34 aa)
MVTSFCRRSLFQMRTGCLESILLKIQARCLPFHV*

>peptide 5 (35 aa)
MTVSLIYVLPICINQTIQIHFMSIFFHTVVHVLHS*

>peptide 6 (57 aa)
MRNLNWAIFSPNDSLVDLCPPNLHQSDHTNPFHVHFLPYSCSCIAQLIDQTLSKCSL*

>peptide 7 (50 aa)
MDEIWFNQPSLSLSPSFVYTTQEDIICGRTCDLWSGGVKLALYEIQGSKV*

>peptide 8 (68 aa)
MKRIITVPVCNLAIIMETMETQCRVVSLSLSLSLSLSLFSPSLSLSLSSLLSLSLSLSLSLSHTQIPE*

>peptide 9 (30 aa)
MSSQFASIRPYKSISCPFSSIQLFMYCTVD*

>peptide 10 (94 aa)
MVTARHEKNNYCTSLQPGNNNGNNGNSVQSSLSLSLSLSLSLSLLSFSLSLSLFSPLSLSLSLSLSLSHTNSRITLFKTSFIIINLMWVLEFSY*

>peptide 11 (46 aa)
MSLWHYSTFQGVGSVALTNLLGVPSSRDCMISTNPSPTQGWVRCET*

>peptide 12 (45 aa)
MLLILQILEKIGHLCNPENGRDSGRVVVGGSDGSLCFRVVRKVRP*

>peptide 13 (53 aa)
MICVIDICKRGNSLEYHWHLFRLIKKSLFVCWVTFKECFLLVGVYASCMKLKR*

>peptide 14 (50 aa)
MSKQRDIRDMKCFSFFKSLRKLVISAILKTVVTVEGLSWVGVMVACVFVS*

Sequence

>CNT0023953
GATTTTGCTGACTCCATTCGAAACCGCTTCGGACCCCCTCTCTCTCTCTTAAAAAAAACCCATATGTAGACGCCTTCTTATGTATCACCAAAAATCCTAC
AAACTGGAGACCTCTTCTTTTCCTTTCTCTCTCTAAAAGGTCCAGAAGAAAAAAGAATTTCTCCTGTCACCATGCCTGGAAAGGATATGACCTCCAAAAT
TGGAATGCCACCTTTAGATGTTTCTATTGCATTTCCTCAGGCAACATCAGCATCTGTCTTTCCTCCTTCCGTCTCAGACTATTATCAGTTTGATGATTTA
TTGACTCCTGAAGAAAGAACCATCCGAAGATATGTGAGAAAGCTTGTTGAAAAGGAAATAGCACCAGAGATGGTAAAGTTTTGGGAGAAAGCAGAGTTCC
CATTTCATCTTGTACCCAAGCTTGCTGCACTCCGTATCGCTGGTGGTACGATTAAGGGTTATGGGTGTCCAGGGCTCTCCATTACTGCAAGTGCTCTTGC
TATAGCTGAAGTTGCTAGGGTTGATGCAAGCTGTTCTACATTTATTCTGGTTCATTCCTCCTTGGCCATGCTAACAATTGCTCTATGTGGTTCTGAGGAT
CAAAAGCATAAATATTTACCCTCATTGGCTCGTTTTGATACAATTGCCTGCTGGGCTTTAACTGAGCCTGATTATGGAAGTGATGCTAGTTCCTTATCGA
CAACAGCAACAAAGGTACCTGGTGGTTGGCTGCTTGATGGTCAGAAACGCTGGATAGGGAACAGCACATTTGCAGATGTCTTGGTTGTCTTTGCTAGAAA
CATGAGCACTAACCAGATCAATGGATATATTGTAAAGAAAGGGACAGCTGGACTAAAGGTATCTAAGATTGAAAACAAAATTGGCCTGAGGATTGTTCAG
AATGGTGACATCCTTTTGCAGAAGGTCTTTGTTCCAGATGAGGACTGGTTGCCTGGAGTCAATTCTTTTAAAGATACAAGCAAGGTGCTTGCCGTTTCAC
GTGTGATGGTTGCATGGCAACCTATTGGGATAGCAATGGGTGTATATGATATGTGTCATAGATATTTGCAAGAGAGGAAACAGTTTGGAGTACCATTGGC
ATCTTTTCAGATTAATCAAGAAAAGCTTGTTCGTATGTTGGGTAACATTCAAGGAATGTTTCTTGTTGGTTGGCGTTTATGCAAGCTGTATGAAACTGAA
AAGATGACTCCTGGTCATGCTAGCTTAGGCAAGGCTTGGACTTCCTTGAAGGCTAGAGAGACTGTTTCTCTTGCACGGGAACTACTTGGTGGTAATGGAA
TTGTAGCTGATTTTCTGGTGGCCAAGGCTTTCTGTGATCTGGAGCCTATTTTCTCATATGAAGGCACATATGAAATCAATAGTTTGGTGACAGGAAGAGA
AATTACAGGAATAGCGAGCTTCAAACCTGCTGCGGTTGCTAGAAGAAGTAGCTTGTAAGAAACAATTACATCTTCCAACCAGGGGTAACTTCATGGTAAC
CGCAAGACATGAAAAGAATAATTACTGTACCAGTCTGCAACCTGGCAATAATAATGGAAACAATGGAAACTCAGTGCAGAGTAGTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTCTCTCCTTCTCTCTCTCTCTCTCTCTCTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA
CAAATTCCAGAATAACTCTTTTCAAAACTAGCTTCATCATCATTAATCTAATGTGGGTTCTGGAATTTTCATACTAGTACAATGGTTCAGAGTTATAGAA
AAGGAGAATGATCTCATGTCACTCTGGCATTATTCAACTTTTCAAGGAGTAGGGAGTGTCGCGCTTACAAATTTACTTGGTGTTCCATCATCAAGAGATT
GCATGATTAGTACTAATCCATCTCCGACACAAGGCTGGGTCAGATGCGAAACTTGAATTGGGCTATTTTCTCCCCAAATGACAGTCTCGTTGATTTATGT
CCTCCCAATTTGCATCAATCAGACCATACAAATCCATTTCATGTCCATTTTCTTCCATACAGTTGTTCATGTATTGCACAGTTGATTGATCAAACACTAT
CAAAGTGTAGCTTGTAGTTTTGCTTTTGATTCTTTCTCGGGCAATGTCGAAACAAAGAGACATTAGGGACATGAAATGCTTCTCATTCTTCAAATCCTTG
AGAAAATTGGTCATCTCTGCAATCCTGAAAACGGTCGTGACAGTGGAAGGGTTGTCGTGGGTGGGAGTGATGGTAGCCTGTGTTTTCGTGTCGTAAGGAA
AGTAAGGCCTTGAAAGCTCAGGGTAGTGGGAAAGTCTCTTATGGGTCTCACCCCATGATCTCGTGAAATTAGTCTAGAGGATTGGGTCAGCGAGGAGGAG
GCTACAGCTGAGACCGACTGCGAAACCACCACACTCAAACCTGGTTAACTGCAAGAACGGTAAAGTGATGGATGAGATATGGTTCAATCAACCCTCTCTC
TCTCTCTCTCCCTCTTTTGTATACACAACTCAAGAGGACATCATCTGTGGAAGGACTTGTGACCTTTGGTCTGGTGGTGTGAAACTGGCATTATATGAGA
TTCAAGGATCGAAGGTTTGAAGTGTGCTCCTCATAAAAATCAAACCTAATTTTTGAAGATGGTCTGTGCTAATTCTTTTTCAGGAATTCAACAATTTATC
AAAATGTACATGAGAGATCAGCTATTTATATATGGGTGCTGTTTTTATAAGGTTACAACCTTAAAATCCAACAATCCAATTCAGGCG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ERN08456 hypothetical protein protein coding CNT0023953 90 63 CDS Trans