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Detailed information on CNT0023992


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q949R9|MPC1_ARATH, E-value = 2e-53

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000099, E-value = 4e-08 (G. max)
CNT0010308, E-value = 2e-37 (S. tuberosum)

Expression of CNT0023992

ERR364329: 38.527 RPKM

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLSCFLLLVFYAWKIFSSLLCKISPSYLIYCVSYLYSCL*

>peptide 2 (103 aa)
MAAALKAFLNSPMGPKTTHFWGPVANWGFVIAGLVDTKKPPELISGNMTSAMCVYSGLFMRFAWMVQPRNYLLLACHVSNESVQLYQLSRWAAAQGCMMI
GAA*

>peptide 3 (34 aa)
MPGRSFLLFSVRSLLLILYIVYPIYIPVYKVIRLW

>peptide 4 (62 aa)
PSEFLRRAYSRPLIESNSLKIKRTRQPPLSLSTAPQFTRDIRLHRSGISLFPNGCCPKGLLE*

>peptide 5 (34 aa)
MMIEVVATLFCRQHCGTDSYHCRQHCGTDTCYCR*

Sequence

>CNT0023992
GTCCTTCAGAATTCTTAAGAAGAGCTTATTCACGCCCACTTATTGAATCCAACTCCCTCAAAATTAAGCGCACGAGGCAGCCACCCCTCTCTCTCTCGAC
TGCTCCTCAGTTCACCCGTGACATTAGGCTGCACAGGAGTGGCATCTCATTATTTCCCAATGGCTGCTGCCCTAAAGGCCTTCTTGAATAGTCCAATGGG
ACCAAAGACCACTCATTTTTGGGGTCCTGTTGCCAACTGGGGCTTTGTAATTGCTGGATTGGTAGACACAAAAAAGCCCCCAGAATTGATATCTGGAAAC
ATGACTTCAGCAATGTGTGTTTATTCGGGGCTTTTCATGAGGTTTGCTTGGATGGTACAACCTCGTAACTATTTGCTTCTAGCCTGCCATGTCTCCAATG
AAAGCGTTCAACTCTACCAACTGTCACGGTGGGCAGCTGCTCAGGGCTGCATGATGATTGGCGCCGCATGATGATTGAAGTCGTAGCAACATTGTTTTGT
CGGCAGCACTGTGGCACCGACTCCTATCACTGTAGACAGCACTGTGGCACCGACACCTGTTACTGTAGATAAACTTTTCACTATACAAAGGCCACCTGTC
CTGGCCACCTGTCTCGATTTAAATTTTTTTGAATTTCAGATTTCAAATCCGCAGTCTATAAATAGTCCTTCGAGGCATTGTAATCGACATGGTGCTTCTA
GAGCCTCTCAGCCTGCTTAGTCTTGGTTGTGCTTTAGTCCAGTGTGCTTGAGTCTTTAGTATGCTTTCTTATTATGCTTTCCTGCTTTCTTCTGCTAGTT
TTTTATGCCTGGAAGATCTTTTCTTCTCTTCTCTGTAAGATCTCTCCTTCTTATCTTATATATTGTGTATCCTATTTATATTCCTGTTTATAAAGTTATT
AGACTTTGGTG