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Detailed information on CNT0024020


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007023, E-value = 5e-13 (V. vinifera)
CNT0043317, E-value = 1e-10 (A. thaliana)
CNT0000909, E-value = 1e-07 (G. max)
CNT0029963, E-value = 1e-10 (O. sativa)
CNT0011703, E-value = 1e-10 (S. tuberosum)

Expression of CNT0024020

ERR364329: 298.68 RPKM

Peptides detected in this lncRNA

>peptide 1 (105 aa)
MASIVNKIGEKLGIGGDKKHGEEHKHGEEHKHGEELKHHKEGEHSHGEHGEHKEGFMEKVKEKIHGDGDKIHGDGEKEKKKKKKKKKKPGHEHDGGSSSS
SSDSD*

>peptide 2 (40 aa)
MERSTNMVRSTNMVRSSNTTRKGSILMGSMVSTRKGSWRK*

>peptide 3 (55 aa)
MEMGTRSMEMGRRRRRRRRRRRRSLATSMMAAAAAAALTVIRKKVNEESSECVFE*

Sequence

>CNT0024020
TCTAAATCAACGCTCGATACAGCTCCCTACTCCTATAAATAGGGCACAAAGCATAGGATTCAATACATAGAAAAACCAGAAAGAGAGGGGAATCCATCGC
CAGTCTTAGTGAGATAAAGAGAACCATCTAGAGGGGGAGAGAGAGAGAAATGGCTTCCATTGTGAACAAGATTGGGGAGAAGCTTGGTATCGGTGGAGAC
AAGAAGCATGGAGAGGAGCACAAACATGGTGAGGAGCACAAACATGGTGAGGAGCTCAAACACCACAAGGAAGGGGAGCATTCTCATGGGGAGCATGGTG
AGCACAAGGAAGGGTTCATGGAGAAAGTGAAGGAGAAGATCCATGGAGATGGGGACAAGATCCATGGAGATGGGGAGAAGGAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGCCTGGCCACGAGCATGATGGCGGCAGCAGCAGCAGCAGCTCTGACAGTGATTAGGAAAAAGGTAAACGAGGAAAGCTCGGAGTGCGT
GTTCGAGTGATGCTTGTAGTCATGTGTGAAAGTTTGATGTTTGTAATAATGACGTGTCCTCAGTAGAACATGAGCTTTCTTTGTATATTATGCCTATATT
AATGTGATAGTTTTGTGAGTATTGGTCTGGATTTTTTATTTTCTTTTTTATAACTTTGGGTCGAATTAT