« Back to Amborella trichopoda searchLow confident - view alignments »


Detailed information on CNT0024091


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P47816|PDCD2_RAT, E-value = 2e-61

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003348, E-value = 4e-07 (V. vinifera)
CNT0043317, E-value = 3e-08 (A. thaliana)
CNT0029963, E-value = 1e-10 (O. sativa)
CNT0011703, E-value = 7e-09 (S. tuberosum)

Expression of CNT0024091

ERR364329: 12.113 RPKM

Peptides detected in this lncRNA

>peptide 1 (414 aa)
MVVHLNEHLSSLDIQQEGEAELVSSSSSSEEEEEDEEEEQEEEEAENVTLGFVEKRKNPRTLQRQFFPSKAGGQPAWLEPDNLPTGDSCICDICGGPLQF
LLQVYAPISEYEYTFHRTLFVFMCPSMTCLVKDQLEQKNAKSGKIARSVKVFRCQLPRANPFYSPEAPKCTDSPSSIGATLCTWCGTWKGNKICSGCKQA
NYCSEKHQMIHWRGGHNNDCNKTGASPQSVGCSSRCKTSSKASPIVSNKVASASQWPEYEIINEDESAFFMEDMEAKGLETSLVSQNHMDGALQSLVDKF
VGSNDRESWASFQSRIALAPEQVMRYCREVDSKPLWPSLNSRPMDADIPTCEHCGSRRGFEFQVLPQLLYYFHVKNDDDSIDWATIVIHTCGSSCDTGPT
YKEEFAWVQLCSTP*

>peptide 2 (53 aa)
MYPNSATFTESLTGKNSWGLQMRKVINAGSLRRKKTHRPSEKRNPQQLNYPSL*

>peptide 3 (81 aa)
MYCTRSLPRQQQNALNNEGLVVALTTELVQQKWFDVEFTLVALMTELLLLTHCTNGKTHWGFARCFLIYARKANITFWDGR*

>peptide 4 (44 aa)
MGATNAKGHQRWFAEKKKNSPPLRKAKSPATQLSISLTLSHSKP*

>peptide 5 (42 aa)
LYFVFIKAWIFRNFIIRFSLGFIETSSIVFCFCFFFFGKSVG*

>peptide 6 (98 aa)
MQISQHANIVVADEVLSSRYCLNCSIIFMLKMMMTRSIGRQSSFTLVDLRVILAPPTRRSLLGCSFVLLLDYLQKHFLSWFLFHARVVLSFFPGNRKA*

Sequence

>CNT0024091
GCTTTATTTTGTTTTTATAAAGGCTTGGATTTTTAGAAACTTCATCATTCGTTTTAGCCTTGGATTTATAGAAACTTCATCAATCGTTTTTTGTTTTTGT
TTTTTTTTTTTTGGTAAATCAGTAGGGTAACTTTCCCTCGTTTGAAAGCTGTGCAATGTACCCCAACTCTGCAACTTTTACGGAAAGTTTAACCGGCAAG
AACTCATGGGGGCTACAAATGCGAAAGGTCATCAACGCTGGTTCGCTGAGAAGAAAAAAAACTCACCGCCCCTCAGAAAAGCGAAATCCCCAGCAACTCA
ACTATCCATCTCTCTAACCCTTTCTCACTCAAAACCCTAGCAACTCCACCATCCATCCATTGCTACTCGCCCCAACGAAGCTCAACCCTCCAGCAACTCC
TGTCCTCCTCGCCCCCAGGTCTATTCCCCTCATCGCTGCAAGCTAAGAGCTCAGAGAAATCTATTTTTCAATTGTAGAGCCTTGATCAACACCAACAACC
ATGGTGGTTCACTTAAACGAGCATCTCTCCTCCCTTGATATCCAACAAGAAGGAGAAGCTGAACTAGTTTCATCATCATCATCATCAGAAGAAGAAGAAG
AAGACGAAGAAGAGGAACAAGAGGAAGAAGAAGCGGAGAATGTAACCCTAGGGTTTGTTGAGAAGCGGAAAAACCCTCGCACTCTGCAACGCCAGTTCTT
TCCTAGCAAGGCTGGCGGTCAACCTGCATGGTTGGAGCCTGACAACTTACCTACTGGAGATAGTTGCATATGTGACATATGTGGAGGGCCTCTACAATTC
TTGCTTCAAGTTTATGCTCCAATATCGGAGTATGAATACACCTTCCACAGAACACTGTTCGTTTTCATGTGCCCTTCCATGACCTGCCTCGTAAAGGACC
AACTTGAGCAAAAAAATGCCAAATCAGGAAAAATAGCTCGAAGTGTGAAAGTCTTTCGTTGCCAGCTTCCTCGTGCTAATCCTTTCTATTCACCTGAGGC
CCCAAAGTGCACTGACTCGCCTTCTTCAATTGGAGCAACATTGTGTACATGGTGTGGGACATGGAAAGGAAATAAAATATGTTCTGGTTGTAAGCAAGCA
AACTACTGTTCTGAAAAACACCAGATGATCCACTGGCGTGGAGGCCATAATAATGATTGTAATAAGACTGGTGCCAGTCCACAATCTGTGGGGTGTTCCT
CTAGGTGTAAAACAAGCAGCAAGGCTTCCCCAATAGTGAGCAATAAAGTTGCGAGTGCTTCTCAGTGGCCGGAGTATGAAATAATAAATGAAGATGAAAG
TGCCTTCTTTATGGAAGATATGGAGGCCAAAGGATTGGAAACTTCTCTAGTTTCTCAAAATCATATGGATGGCGCACTTCAGTCACTGGTAGATAAATTT
GTGGGATCTAACGATAGAGAAAGTTGGGCATCTTTTCAATCACGCATTGCCTTAGCTCCCGAGCAAGTGATGAGGTATTGTAGAGAAGTTGATTCAAAAC
CTCTGTGGCCATCATTAAATAGCAGGCCTATGGATGCAGATATCCCAACATGCGAACATTGTGGTAGCCGACGAGGTTTTGAGTTCCAGGTATTGCCTCA
ACTGCTCTATTATTTTCATGTTAAAAATGATGATGACTCGATCGATTGGGCGACAATCGTCATTCACACTTGTGGATCTTCGTGTGATACTGGCCCCACC
TACAAGGAGGAGTTTGCTTGGGTGCAGCTTTGTTCTACTCCTTGACTATCTCCAGAAGCATTTTCTTAGTTGGTTTCTCTTCCATGCGAGGGTGGTTTTA
AGCTTCTTTCCAGGAAACAGAAAAGCCTAGGGGTGTTTCTTCATCAATTTTTCTCTGCTCTTGCTTTTTGTGTTTGAGTTCAATGAAATTATATCACAGT
GAATGTACTGCACAAGGTCCCTTCCAAGGCAGCAACAAAATGCCCTAAACAACGAGGGCCTTGTAGTTGCGCTAACAACTGAACTCGTGCAGCAAAAATG
GTTCGATGTTGAGTTTACGTTGGTTGCGCTGATGACCGAACTCCTTTTATTGACTCATTGCACTAACGGCAAAACTCATTGGGGCTTTGCTCGTTGCTTC
CTCATCTACGCTCGTAAAGCCAATATTACTTTTTGGGATGGGAGGTGAAACAACAGTGGAAGCGGACATTTCGAAATAACAACATAAATTAACGAGACTC
GGTTATCCTGGACCGCGCTCCAGAAAAAGTGGCCCGCTTGATAACCAATGTGAAGGGTACAATTTTGTTAAAGAGTTACTCGCACTCTTGGATGAGTTTT
GTATTAAATAATATTCTTCCTTTAGTGAACACAGATTAATATAGCATTTGATTTGTTAGGTGATTTGAATACACCTCAATGAACATTATTGATCAAATGA
ACACAAT