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Detailed information on CNT0024167


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 6e-11 (V. vinifera)
CNT0042615, E-value = 7e-14 (A. thaliana)
CNT0033040, E-value = 7e-14 (P. patens)
CNT0020781, E-value = 7e-14 (Z. mays)
CNT0002871, E-value = 2e-14 (G. max)
CNT0029752, E-value = 2e-14 (O. sativa)
CNT0008755, E-value = 2e-10 (S. tuberosum)
CNT0040165, E-value = 2e-11 (S. moellendorffii)

Expression of CNT0024167

ERR364329: 3.051 RPKM

Peptides detected in this lncRNA

>peptide 1 (72 aa)
HTYLRSLHLNFHILEREREREREREREGPKPLFQLSTPLTPVSSLVKPLRVHPCNFLCSPISPESSSERERE*

>peptide 2 (49 aa)
MTLLIFSCDPSGGWNIKETSCGFNQRYTHNTICSNCKIQEKKGNCMIDE*

>peptide 3 (34 aa)
MPPPKPARFASPQRLENRFLDRIPCLLERERFGI*

>peptide 4 (62 aa)
YLPSKPPFEFSYFRERERERERERERGAQALVSTFNALNARLLSRQTSQSPSLQLPLLSNFA*

>peptide 5 (188 aa)
MGSLGRAAKTLFFIACMSASFLLVSAPALLLLTDTILPFALLSTFSHLSHQSLSSYTFRSSLLDIPLISIVRSLVITCVYSICDGVALSHGPYLGTATVC
SLLSMMLLWIKALVFEGNLKQLRGAPLIFLASMVLGLSHIVVAYRISCRERRKLLIFYRIDPEAVLGSKKNGFSGYQKVKVLQEVRVQ*

Sequence

>CNT0024167
CATACCTACCTTCGAAGCCTCCATTTGAATTTTCATATTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGCCCAAGCCCTTGTTTC
AACTTTCAACGCCCTTAACGCCCGTCTCCTCTCTCGTCAAACCTCTCAGAGTCCATCCCTGCAACTTCCTCTGCTCTCCAATTTCGCCTGAATCTTCAAG
TGAGAGAGAGAGAGAATGAATCGCCTTCATAACATCGTGAAATATATATGCCACCGCCCAAACCTGCAAGATTTGCTTCACCACAAAGATTAGAAAACCG
TTTTCTCGATCGAATTCCTTGTCTCTTAGAGAGAGAAAGATTTGGCATATAGTTGAATCCGAAGGCAGCAGAGACATAGACAGATGGGTTCATTGGGCAG
GGCAGCGAAGACCCTGTTCTTCATTGCTTGCATGTCGGCCTCCTTTCTTCTGGTCTCTGCGCCCGCTCTTTTACTCCTCACCGATACCATCCTCCCATTT
GCCCTTCTCTCCACTTTCTCTCACCTCTCTCATCAATCTCTCTCCTCCTACACCTTCCGTTCCTCCCTCCTCGACATCCCTCTCATCTCCATCGTCCGCT
CCCTCGTCATAACATGCGTTTATTCAATCTGTGATGGTGTGGCTCTCTCTCATGGACCTTATTTGGGCACGGCTACTGTTTGCTCTCTGTTATCTATGAT
GCTTTTATGGATCAAAGCCCTGGTTTTTGAAGGGAATTTGAAGCAATTGAGAGGGGCCCCTCTCATATTTTTGGCCTCCATGGTTCTTGGTTTGAGTCAT
ATTGTGGTAGCTTATAGGATCAGTTGCAGAGAGAGACGCAAGCTCTTGATCTTTTACAGAATAGACCCTGAAGCAGTTCTTGGGAGCAAGAAAAATGGCT
TCAGTGGGTATCAGAAGGTAAAGGTTTTACAGGAGGTCAGAGTTCAGTGAAGAAAGAGAGAGAGAGAGAGAGAGGGGAGAGGTTAACATAGCAAAGGAGA
TGCACCCACCTCTTCGCACGTGCCATGACCCTTCTTATTTTTTCTTGTGATCCCTCTGGTGGGTGGAATATTAAAGAGACAAGTTGTGGGTTTAACCAAA
GGTATACCCACAACACCATTTGCAGTAATTGTAAAATACAAGAGAAGAAAGGGAATTGTATGATAGATGAATGAGTTCGATTTGATATTCTCAAAGGGAG
AATATCATGTAAATATTAAAATTAATTGTATATCCTACTTTCTAACTTCCTAATAGTGTTTGAGATGCCTTGCTTGAAGTTCGCATTTTGATCTTTTTGG
GATAATACTAGAGAAATGATGATTGAAAACCTGTACACC