Detailed information on CNT0024260


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CR39|SEC23_CRYNB, E-value = 7e-58

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005713, E-value = 7e-10 (V. vinifera)
CNT0042889, E-value = 2e-10 (A. thaliana)
CNT0033570, E-value = 5e-11 (P. patens)
CNT0019995, E-value = 3e-21 (Z. mays)
CNT0000395, E-value = 2e-10 (G. max)
CNT0024114, E-value = 2e-13 (A. trichopoda)
CNT0038582, E-value = 7e-10 (S. moellendorffii)
CNT0035977, E-value = 2e-25 (C. reinhardtii)

Expression of CNT0024260

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MEKGLRMERHIRQRRGEYGRTGISGTCFRGV*

>peptide 2 (129 aa)
MLWEVIALKAEWANPDLCDIVNNGERVEDGTAHPATEGRIWENRDIRNLFQRSIDSRNRNNTAQSILPRAWNNIPGHPYPILCLKVKELRHFQQSLYNSV
RPPLVKGYAACNIKLLALLNTEELKEIKQ*

>peptide 3 (29 aa)
MGIHGLKTIKTCLHTIRTRNPSSGDRSSS*

>peptide 4 (62 aa)
MQLQCILMHVDQLEQAKGPFAILLLHSEAGNRNLAMLSDERPSLVPAITPVVGFLFPAKKHI*

>peptide 5 (77 aa)
MTKWLLMVDISTYSTSQGEVGLTLQNSLSLSLSLSLSNYTKIQRANKYQYLRFNNQKKTRGICIITHKSEPNYSPAN*

Sequence

>CNT0024260
GAAAGGTTCAGCACTGGATGGCAATGCACTACTGCACTTTAAATGCAGCTTAGATAAAAATCTGTGTTAGCCCCTAATATATGAAGAAAGGTATATCGAT
AGGAAGGTGAGATATTACACTAAAGCAGATTATAAGATGTATTTGATAAATAATCTCACTAAAGCAGACTATAAGATGTAGTATTTGATAAATAATCTCT
GCAAACAAGAATCGAGCTGCCATACAGCCATAGTTGACACGCTATTACCTCGTGGTCTTGTTGATCTTGGTAACCAGCATTTCGCCACTGTGCAATCGTT
ATCCCATGGAAGATAACAACAGTAAAATAAGAATCCAATAAAAGAATCTTGTCAGCTGCAATTGCAGTTACATCTAAGAGAACTGGCTCTGGCCCAGATT
GAAATGAATAGGATATAAGTGAAGGCTGAATCATCACGACTGCATTGGTTACATCTTCCCTGTCCAATACCATCCTAAAATATGCAGTTTCATCAGGACT
ATTGTTAAAAACCTGAACAAACTGAGAACGCCTCAAATTAAAAACAAATTGGGGAAATATTGATATACGCGGGGACAAACTAAAGGATGAAGGGTTTTCC
TTCTGATAGTCACCAAATTTGGAACATAGACGTATCAAAGCTCGATCAAGCCATCTTATAGGATCAAAATCAGCCTCAGTTTCCATCTTAAATGAGACCA
AGCGTGCCATGACAGCAGCTGCAGCTTCTTGGTCAAAGCCACCTATAAGCTCCTAAAGCATACAAAGTTTATTAAGGACAAATGACTGCACTTTTAAATT
AAAACACATACACGCAGTGAAACACATTGGGAATGAATAAGCATTAGTCCCTGCACCTTTATTTTGAGCAAGTGAAACTTGTTCGTATCAATGAAATCAA
CTACATCTGGCAAAAGGAAAAATGAATGGGAATTCATGGGTTAAAGACAATAAAAACTTGCCTGCACACTATCAGAACCAGAAACCCATCTTCTGGAGAT
CGTAGTAGCTCGTAATCTCATTTGTCCCTCATGATGCTGATAATAGGTTAAGAATTGAAAGTAGAACTGGTTACTTGCTGCTTGGCCAATTGTATTTGAT
CCATCTTTCTTTGCAATATCATATACTAAGCAGAGTGATGTTTTCTTGTCAAGGCCACACATCTTCCAAGCACTAGTATTTCCCTGACCAATAACGGTGT
CTGATGATAGAGGGCTTTTCTTCTCCAGGGAAGCACAAGGTCCAATAATGCCTTGGATCTTGACATCTTTTGAGCAGTTAATCTCAAGAATACCATTGAA
TGATAATCCAAGATCGTTGTCTGATGACTGAAAAATGCGAAGAAGCGAGTCTTTGAAAACAGAGTGACCAAAACTTTCCGCAAGGACAACAATTCCTCCA
GTCTTCTCAATTGCAACCTTCATTTCAGCAACACCAACCTGGTCAACTGCACAAGCAAACACATCCAGAACATGCCCCTGGTGCACAAGTTGCTTTGCAA
TCTGATCATAGAACTTGACAGCTTTATCATAAAGTGGAGCTGAGTCTTTATCAAGATCTTTGTGTGAGCGAATTGGCTCTAACAAGGATTTGGATACAAT
CTGCGAATTTTTCAAGACAGTAACCATCCCTCACATGTCTACGCAATATAATTTTGTAATGTGAAAAAATATAGTTGACACCACGATTAAGCAAATAAAC
ATTTGTAGAGCCAAATAAACACCGCGATCAAGGCAATTATATGCTTGTGCACATTGTTGCCCTGTAATATAGGGTTATCACATATTGCCTATTGATGCGC
AACGAATTGATGTGATGTGAATGAAAACAGTGAGATAGATGTGAGCTTACCTTAAAAAAACAGTTGTCATTTGTGCTAGAACAAAGCTAAAAGACTAGCA
TGAAACTAGGTAGGTGTGCCTTTCCATTGCTTATTTAATTAATTAAATAGTCCACAAGCACATATCAAAGGAGATATATGAGCATGCGAATCAATTGCTG
ACAGTATAGATGAACAAGTAATTTTAAAGAGAATGCACTACAATAGAATTAGGACTCACAGAACCAGGTCCCTCTGTAGATGGACCACCAACAAATGCCA
TAATCCTAGCACCTGATCCAGGGACACACACACCAAGAAGACTGGCCGCCACGCTTAATGCAGCTCCAGTGCATCTTGATGCACGTTGATCAGCTGGAAC
AGGCCAAGGGTCCTTTTGCAATTCTTCTATTACACTCAGAAGCAGGTAACAGGAACCTAGCAATGCTCTCTGATGAAAGACCGTCCCTAGTACCAGCAAT
CACCCCTGTAGTGGGTTTTCTCTTCCCTGCAAAGAAGCACATTTGATCCAACATTTCATCCTTGGTGACCTCCTTTGTTCCCTTGAATACATATGATTTT
GGAAGCAAGCCAAAACCCAATTCATGAACCTGTACATATGTCCCAAAAGTAATGAATCCAACAAGGGAATTATCTGGTAATAGCTCAACAACTTGTGCGA
GTGCAGACTTCAAATAACCAATTTCTTCCTCAATCATGCAAGTATCAACAACAAACATGAAAACCGGTGGCACTACAGGGCCAGTTTCAGCAGTGGATAT
GTACTCAACTGTGGTGTACTGAGGGAAAAGTTCTGCAGGGAGATTGCTTTCTGAGATTGAGGAGTAATGCTGTGGGAAGTGATTGCGCTGAAAGCAGAAT
GGGCAAACCCAGATCTTTGCGACATAGTCAACAATGGAGAAAGGGTTGAGGATGGAACGGCACATCCGGCAACGGAGGGGAGAATATGGGAGAACAGGGA
TATCAGGAACTTGTTTCAGAGGAGTATAGATAGCAGAAATAGGAACAACACAGCTCAAAGCATCCTCCCTCGTGCCTGGAATAACATTCCAGGGCATCCT
TATCCCATCTTGTGCCTCAAGGTCAAGGAACTCAGACATTTTCAGCAGTCTTTATATAATTCTGTCAGGCCTCCACTAGTAAAAGGATATGCCGCCTGCA
ATATCAAATTATTAGCTTTGCTGAATACTGAAGAACTGAAAGAAATTAAACAATAAATACGAAAAATATAATCAAGACAAAAAATAACAAAGAGAAGAAG
GCCCTTGAAAGTGGATGCCAGTTACTACCGAAATACTGTAAGGAAAACCAATAACCCTGATCCAAAACCTTGAAAGTCGATTTAAGTATGACAAAGTGGT
TGCTAATGGTTGATATCTCTACTTATTCAACTTCACAAGGCGAAGTTGGTCTGACATTGCAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAA
TTATACAAAAATACAACGAGCTAACAAATACCAATATTTACGGTTCAACAACCAAAAAAAAACTCGCGGAATTTGCATAATTACACACAAATCAGAACCT
AACTATTCGCCTGCCAATTAAAAAAAAACATAGACCAGAATTGAAGTATTCGCTTGTCCCACATTGTGTTTGTGCTCCAAAACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACGAAGGGTTCCTCCTATTTGATACACATGCATAACTCCGTAGATTCGAAATTGAATCACCCC
CATCCATGATCAAACGACTTCGCACCAGAGAACGAGCAACCCCAGATCCCCTAAAAACATCGCCCCAAACCCAAAATCTCAAATAAGTGGAGCAGCCAGC
CAAGGGGACGAGGCGGCTAACCTGCGAATACTAGAACGCTGCTAGGCAACGGGGTGCTACTGACCTGACAGCACCGCGCCGCAGGCAGCGGCGGCCGGAG
TCGGTGGAGGAGGCGGCCGAGGCGAAACGGGCGGGGCGCGCGAGCGCGATGCGATCGGGAGAGAGAGGACTCCGCCTCCGGCAAACAGT

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS08T0240600-00 Os08g0240600 protein protein coding CNT0024260 134 45 CDS_UTR Trans
OS08T0240600-00 Os08g0240600 protein protein coding CNT0024260 136 46 CDS_UTR Trans
OS09T0460200-00 protein coding CNT0024260 1806 632 CDS Cis
OS09T0460200-00 protein coding CNT0024260 2231 810 CDS Cis
OS09T0460200-00 protein coding CNT0024260 1033 376 CDS_UTR Cis
OS09T0460200-00 protein coding CNT0024260 1416 515 UTR3 Cis