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Detailed information on CNT0024300


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6CQE5|TAR1_KLULA, E-value = 4e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0032811 in P. patens

Most similar lncRNAs:
CNT0032811, E-value = 1e-44 (P. patens)
CNT0014407, E-value = 4e-07 (S. tuberosum)

Expression of CNT0024300

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLRIGRPRRPNCSLERRPQRRTGPKSPGKGRLGG*

>peptide 2 (49 aa)
PGARPARWPLRTQTHRERTPRTATPGQAGLPAEFKHINKRRRRNLRGFP*

>peptide 3 (37 aa)
TPARGRRGGPSGPKRTESERLGPRPQVRRDYPLSLSI*

>peptide 4 (32 aa)
PRRAAGAVAPQDPNAPRANASDRDPRSGGTTR*

>peptide 5 (49 aa)
MQPKSGGKLRPRLNTGERPIANKYRERPIANKYREGKMKRTLKRESKSA*

Sequence

>CNT0024300
ACCCCGGCGCGCGGCCGGCGCGGTGGCCCCTCAGGACCCAAACGCACCGAGAGCGAACGCCTCGGACCGCGACCCCAGGTCAGGCGGGACTACCCGCTGA
GTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGATGCCCAGCTTGAGAATCGGGCGGCCG
CGCCGTCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCTGGGAGGGTGAGAGCCCCGTCCGGCCC
GGACCCTGTCGCCCCACGAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAGGCGAG
AGACCGATAGCGAACAAGTACCGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAA
ATTGCCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGCCCCGGCC