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Detailed information on CNT0024396


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6K471|FTRC_ORYSJ, E-value = 1e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001721, E-value = 1e-11 (G. max)

Expression of CNT0024396

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MQWHSFLQKLINQLKTDGSNSSSYSLFHLYLCPL*

>peptide 2 (67 aa)
MKSEQRNSETSPCSAPITKPQIASQHYLCTIIVVKTRVIKNWTSHAWEHKGSSKILVLPQQLCHHNA*

>peptide 3 (36 aa)
MGPTAHHIHYFIYIYVHYNKKIRARRDYVPKSSVYM*

>peptide 4 (36 aa)
MAFLPAKVDQPIENRWVQQLIIFIISFISMSIITKK*

>peptide 5 (58 aa)
MFLSHRYICRTHGFKSHDDITEERLYQNIYASHFGQSAIIYSRFVCALLEMHMPPQIL*

>peptide 6 (68 aa)
MPDLNLHLENRFGSITLITTAVTDFSEQKKVLERRAYCSENLRIISSDLSDASAPAAPAVYPQIKQKKS

Sequence

>CNT0024396
TGGAGTCAATCGGAAAATATCATACCTTTGATTCAAAGGATGAACAAACATGATGCTTTGTATCAAGTGCGTAGTTAATAGGCTGTTGTATTAGTGGGAG
CGTGTTTTCCCATGTTCAAAAGCAAGAACATGAAAGCTAAGGAACGACAAATTGTTGTTTACTACACATCTTATCATGACCGATTTCATCGGTAGAATGT
CATCTTACAGAGACTACATATACAAACTCTGGTGTCAAGCAGAATAATGGAAGAAAAGGTGCACTGAGGTTATATCTTTGATGTTGCGTCTTTGATCTCC
TCCAAGGTTATAGCCTGCAATATGCATAGAGTATATATAAGGAAAAATAAAATTACTTTGAGGAATTTGTAGAAATGACGTTCATGCAATGACAACGGAG
AGCTAGATGGTATCTGTGAAGAAAACATTGTGAAAAAGGAGCATGCCTGGTCTTGTCCAGCAAAGTCATTGTCGGGGGTAAGAAAAAGCATGCAATGGCA
TTCCTTCCTGCAAAAGTTGATCAACCAATTGAAAACAGATGGGTCCAACAGCTCATCATATTCATTATTTCATTTATATCTATGTCCATTATAACAAAAA
AATAAGGGCCAGAAGAGACTATGTTCCTAAGTCATCGGTATATATGTAGGACACATGGTTTCAAAAGTCATGATGATATTACTGAGGAACGTCTTTATCA
AAACATCTATGCTTCTCACTTTGGGCAATCAGCAATAATCTACAGCAGATTCGTTTGTGCTCTCTTAGAAATGCATATGCCTCCACAAATACTATGAAAT
CGGAACAAAGAAACAGTGAAACCTCACCATGTTCCGCGCCTATAACTAAACCACAAATAGCATCACAACATTATTTATGCACTATCATAGTTGTTAAAAC
AAGAGTTATAAAGAACTGGACCTCTCACGCATGGGAACACAAGGGCAGTTCCAAAATCCTTGTGCTACCTCAGCAGCTTTGTCATCATAATGCCTGATTT
AAATTTACACCTAGAAAATAGATTTGGTTCCATTACCTTGATAACAACGGCGGTGACGGACTTCTCGGAACAGAAGAAGGTGTTGGAGCGGCGGGCGTAC
TGCTCAGAGAATTTGCGCATAATCTCGAGCGACTTATCAGATGCATCCGCTCCGGCAGCTCCAGCTGTGTACCCCCAAATTAAGCAAAAGAAATCA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS09T0249900-01 Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic protein coding CNT0024396 2584 939 CDS_UTR Cis
OS09T0249900-01 Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic protein coding CNT0024396 550 185 CDS Cis