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Detailed information on CNT0024494


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P40909|RL40_CRYNJ, E-value = 2e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005932, E-value = 1e-21 (V. vinifera)
CNT0033455, E-value = 8e-23 (P. patens)
CNT0019050, E-value = 5e-21 (Z. mays)
CNT0000474, E-value = 4e-09 (G. max)
CNT0009867, E-value = 8e-23 (S. tuberosum)
CNT0035798, E-value = 6e-36 (C. reinhardtii)

Expression of CNT0024494

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRRCWSGGIPHTFLVLDLGLDVVDGVAALHLQRDRLPRQRLHEDLHLA

>peptide 2 (40 aa)
HLLAVATLLLAAVVRPDGKACIAPASGDGTGARRVGSWMV*

>peptide 3 (50 aa)
MEQEPGGWAPGWCSRPCCRRGGGAPGAASTPSGCCSRPGCGRHPAASRRR*

Sequence

>CNT0024494
CTCACCTCCTTGCTGTGGCCACACTTCTTCTTGCGGCAGTGGTGAGACCTGATGGGAAGGCGTGCATAGCACCTGCATCAGGAGATGGAACAGGAGCCCG
GAGGGTGGGCTCCTGGATGGTGTAGCCGCCCCTGCTGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGG
GTGCGGCCGTCATCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATACCTCATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG
TCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTTGCCG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS09T0483400-01 protein coding CNT0024494 296 94 UTR3 Cis