Detailed information on CNT0024577


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0033314, E-value = 3e-09 (P. patens)
CNT0002951, E-value = 2e-10 (G. max)
CNT0023377, E-value = 3e-12 (A. trichopoda)
CNT0015837, E-value = 3e-06 (S. tuberosum)
CNT0037249, E-value = 2e-19 (C. reinhardtii)

Expression of CNT0024577

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFMANECRGVTGMMSRRLCCWRSGLRRSTRW*

>peptide 2 (50 aa)
MVADADYQKRKSSRSSGSAADTEGQGRGSCHRIWCVCVCVCVCVCVCLCV*

>peptide 3 (62 aa)
MRTTRNAKARDPPGVPPILKAKEEVAATGSGVCVCVCVCVCVCVCVCDLPLALAAACQDLPH*

>peptide 4 (40 aa)
MKMKTSTRPPRSISRSKLSMKTSRCFVPSPKPRLWNKLVA*

>peptide 5 (32 aa)
MQFTLISHLFCVYQLVYPGTGTISQVMHNTLM*

>peptide 6 (110 aa)
SQPISLSSLFLSISLSVPPPRAAALRLLAPPSPEELRRRPPPLPRPPVAEPGLAAATRPQAEPSRARGRRRNRAEPLPGRPRASFPPRAADSRGPHLFPS
NSCRQICFRV*

Sequence

>CNT0024577
TCCCAACCCATCTCTCTCTCCTCTCTCTTTCTCTCGATTTCACTCTCTGTGCCGCCGCCTAGAGCCGCCGCGCTCCGTCTTCTAGCGCCGCCGTCGCCGG
AGGAGCTCCGCCGGAGGCCGCCGCCCCTTCCCCGGCCGCCGGTCGCCGAGCCGGGCCTCGCCGCCGCGACGCGCCCTCAGGCCGAGCCGAGCAGAGCGCG
AGGAAGACGAAGAAACCGAGCCGAGCCACTGCCAGGCCGGCCCCGCGCCTCGTTCCCTCCAAGAGCCGCTGACAGCCGGGGCCCACACCTTTTCCCCTCC
AACAGTTGCCGACAGATTTGTTTTCGCGTTTAGAGCCCGAGTACGAGGAAGCTCCGGACGCCGCTTTCGAGGGAAAAGACCCCAACCCTGTGCAAGAGTA
TGAAGATGAAGACGTCGACCCGACCGCCGAGGAGTATCTCCAGGAGCAAGCTGAGTATGAAGACTTCTAGATGTTTTGTCCCTAGCCCCAAGCCTCGCTT
GTGGAATAAGTTAGTTGCCTAGGTTCATAGCCTAGAGCATAGTTGCTTAGTCGCTTAGTCTCTCCGCGTGTTCGCTTTTATGTTTTTCTGTGCTATTGTG
TTGCTCATCCATGGGCCTGTCCATGATAGCAACTTATGTAATGACTGCTACCCAGTGATGTAATAATGCAGTTTACTTTGATTTCACATTTATTCTGTGT
GTACCAGCTAGTGTATCCTGGGACTGGTACTATATCACAGGTAATGCATAACACCCTGATGTAAGTTAGCTATGTTTATGGCTAACGAATGTCGGGGCGT
TACAGGCATGATGTCTAGGAGGCTTTGTTGTTGGAGGTCCGGGTTGAGGAGGAGTACGAGATGGTAGCGGATGCGGACTACCAGAAACGCAAAAGCTCGA
GATCCTCCGGGAGTGCCGCCGATACTGAAGGCCAAGGAAGAGGTAGCTGCCACCGGATCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTGTGTGTGTGACCTGCCGCTGGCCTTGGCTGCTGCTTGCCAAGACCTACCCCATTGACGCCACACCATAGTCTCTACATTAATATCGCCGCCACGCTG
TGGACCAAGCCCACCAACCTCTACTACTC