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Detailed information on CNT0025166


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q948L0|SUT3_ORYSJ, E-value = 9e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 5e-20 (V. vinifera)
CNT0042553, E-value = 8e-19 (A. thaliana)
CNT0034328, E-value = 5e-20 (P. patens)
CNT0019093, E-value = 3e-21 (Z. mays)
CNT0000126, E-value = 5e-20 (G. max)
CNT0022384, E-value = 8e-19 (A. trichopoda)
CNT0015837, E-value = 5e-17 (S. tuberosum)

Expression of CNT0025166

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SILLVKTVWVLNRFIRESIYIYIYIYIYIYIYIYVCVCVCSNSYRC*

>peptide 2 (40 aa)
MLMNIDENEKGQNALNTYLNVRGEERELQRPAVLHATGDHA

Sequence

>CNT0025166
TCCATATTATTAGTTAAGACAGTTTGGGTTTTGAATAGATTCATACGTGAATCCATATATATATATATATATATATATATATATATATATATATATATAT
ATGTGTGTGTGTGTGTGTGTTCAAATTCATATAGATGCTAATGAATATAGACGAAAATGAAAAAGGCCAAAACGCCTTAAACACATACCTGAACGTACGG
GGTGAGGAGAGAGAGCTGCAGCGCCCAGCCGTACTGCACGCCACCGGCGACCATGCAC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0025166 126 84 UTR3 Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0025166 103 55 UTR5 Trans
OS10T0404500-01 protein coding CNT0025166 704 258 CDS Cis