Detailed information on CNT0025517


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 4e-102

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0033559, E-value = 6e-08 (P. patens)
CNT0002009, E-value = 7e-17 (G. max)

Expression of CNT0025517

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MATVGCREDWGGVAAASPGMMRPAKLAGPSGRQPRVGAWWCGLSSGPQGRDGRSTLAV

>peptide 2 (54 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNIGSFHMVQYLPS*

>peptide 3 (77 aa)
DGFRYALGIILHEYVCIAGDLAFTCPVSPSPNDRPIVVVVLLQQRQVGARENNYVQLNTDTQKKKKKKEHARRNESA*

>peptide 4 (50 aa)
MHLILPPLLTLPKPELVERRLTGSPAVDLSPWNGATEVAEEAITVGAIAT*

>peptide 5 (48 aa)
MSSSSAVEALYAGSPAAYINSNRIMSFHPWPRLAAERIGEEWLPLRRG*

Sequence

>CNT0025517
TCGACGGATTCAGATATGCTCTAGGCATCATATTACATGAGTACGTGTGTATAGCCGGAGATCTTGCATTCACGTGCCCTGTCTCACCGTCACCGAACGA
TAGACCGATAGTTGTAGTAGTACTCTTGCAACAACGGCAGGTCGGAGCGCGAGAGAACAATTACGTGCAGCTTAACACGGACACACAAAAAAAAAAGAAA
AAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTGGCTTATACGCGATGAAGCTAATCAACTGCACCTGCC
TGACGTTGTCGAAGCCGATGATGCGAACAAATGCATCTGGATATGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCAGTGCATCCGAA
CATAGGCAGCTTCCACATGGTCCAGTACCTGCCATCATAGTACCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTACTAAACTCGAGGCAA
GGCACCCATTTGGACCGGAGCAGGTACTCGATCTGCTTCAAGAGGTCCTCGACCGTGAGCGGTGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGT
ACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAA
AAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCACACCTGAATAAATAATGTAAAAATTTAAATC
AGGTTAATTTGAATTTCGTAACATGAGTTAATTTGATCCTTGACTTTAAAGGAGAAGCCTGAGGAGGTATATATCATATATACCTGCATGCACTTGATCC
TTCCGCCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGCTGACGGGGAGCCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGT
GGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTGCTGTTGAG
GCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTATCATGTCATTTCATCCATGGCCACGGTTGGCTGCCGAGAGGATTGGGGAGGAGT
GGCTGCCGCTTCGCCGGGGATGATGCGGCCGGCCAAGCTGGCAGGCCCATCAGGTCGGCAGCCACGTGTCGGCGCGTGGTGGTGCGGCTTATCCTCTGGA
CCACAGGGACGGGATGGGCGATCCACCCTGGCCGTGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS12T0291100-01 Ribulose bisphosphate carboxylase small chain A, chloroplastic protein coding CNT0025517 1613 542 CDS_UTR Cis