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Detailed information on CNT0026995


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0042615 in A. thaliana

Most similar lncRNAs:
CNT0003560, E-value = 3e-13 (V. vinifera)
CNT0042615, E-value = 5e-30 (A. thaliana)
CNT0033040, E-value = 8e-32 (P. patens)
CNT0020781, E-value = 5e-24 (Z. mays)
CNT0000589, E-value = 8e-29 (G. max)
CNT0021918, E-value = 5e-30 (A. trichopoda)
CNT0008755, E-value = 1e-09 (S. tuberosum)
CNT0040165, E-value = 2e-17 (S. moellendorffii)

Expression of CNT0026995

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PPPPPTPAADGPQPLRSAATDSCLIRGYLLRPWIRRLGGVEARATQELQQ*

>peptide 2 (39 aa)
PHPHPRPPPMAPNRCAPPPPTAASSEDTSSVPGSDDWVE*

>peptide 3 (120 aa)
METLPTRGRSNTKKVKASGGSTDEARQLEAKRLSLYSRRNHKRRTTQEITFFGLIWKRSKNDLRSSKLKADDVILRSRDGVGSPMKPTCFLCFKPYRSDL
MYIRCESCRSRLVSWRCPGT*

>peptide 4 (52 aa)
PTPTHARRRWPPTAALRRHRQLPHPRIPPPSLDPTIGWSRSASNPRTPAVRA*

>peptide 5 (29 aa)
MQMTCSRARKLLEQMEIHRSIHLEELNQL*

>peptide 6 (58 aa)
MRRGSWRRSACPCTHGEITSVEPHKRSLSLGSYGREARMTYVAASSRQMMLFLEAGMA*

>peptide 7 (122 aa)
MLSSEEAAGADGDPPLDSSGGVEPTVEETVGANFSANMKSSVPGSVQETIYMDGSSHPTHPVSKGVAKVELVPTVKSEIGIGGSPSTIIVCFSTTKFCRF
FPEPKRIVDRNFNLLSLYDPRG*

Sequence

>CNT0026995
CCCCCACCCCCACCCACGCCCGCCGCCGATGGCCCCCAACCGCTGCGCTCCGCCGCCACCGACAGCTGCCTCATCCGAGGATACCTCCTCCGTCCCTGGA
TCCGACGATTGGGTGGAGTAGAAGCGCGAGCAACCCAAGAACTCCAGCAGTGAGAGCGTAGCAGGTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAACCAATCGAAGAGGCATATGGATCCAAGAGACTGAGAGGAAAGGAGAAGAGAGGCAGAAATTG
CTGCAGTCGAGCGAGGCCAAGAAAGCCACCCGAGTCCCCTTCCTCCCATAGATCCAGCTCCCGCATTCTGATTGATGATGGAGTGAGGAGATTGCCTGAA
CCGATGGAGACATTGCCAACCCGTGGAAGGAGCAACACGAAGAAGGTGAAGGCGAGTGGGGGCAGCACGGATGAGGCGAGGCAGCTGGAGGCGAAGCGCC
TGTCCTTGTACTCACGGAGAAATCACAAGCGTAGAACCACACAAGAGATCACTTTCTTTGGGCTCATATGGAAGAGAAGCAAGAATGACCTACGTAGCAG
CAAGCTCAAGGCAGATGATGTTATTCTTAGAAGCAGGGATGGCGTAGGCTCGCCGATGAAACCGACCTGCTTTCTCTGCTTCAAGCCATATCGATCAGAC
TTGATGTATATCCGCTGCGAGAGTTGCAGAAGTAGATTGGTTTCATGGAGATGCCCTGGAACTTGAGGAAGGAAGGATAGCTCAATTGATTTCGTACAGA
TGCTGCAGATGTCGGAGGAGGCCGTTGCCGAAATGTCCTCATTCAGATTTTTACTATTCCAAAGTGCCTGAACCACAACCCGTCAGTCAAGAAAATGCAG
ATGACATGCTCTCGAGCGAGGAAGCTGCTGGAGCAGATGGAGATCCACCGCTCGATTCATCTGGAGGAGTTGAACCAACTGTAGAAGAAACTGTTGGTGC
TAATTTCTCAGCGAACATGAAAAGCTCTGTCCCAGGAAGTGTTCAAGAGACTATCTATATGGATGGTTCTTCCCATCCTACTCATCCTGTCAGCAAGGGG
GTTGCGAAGGTAGAACTTGTGCCAACCGTTAAGTCTGAAATTGGGATTGGCGGTTCACCTAGCACAATTATAGTTTGTTTTTCCACTACTAAGTTTTGTA
GATTTTTTCCAGAACCAAAAAGAATAGTTGATAGAAATTTCAACTTGCTGTCCTTGTATGATCCTAGAGGCTAGATAAATCGATCCAATATTTGTACTTC
TTTTTGCCTATCAACTGTTCTTTTGCTGCATAATCTATGTCTTTCATATGTGC