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Detailed information on CNT0027330


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 2e-20 (V. vinifera)
CNT0043564, E-value = 1e-18 (A. thaliana)
CNT0035158, E-value = 2e-11 (P. patens)
CNT0021574, E-value = 3e-22 (Z. mays)
CNT0000126, E-value = 2e-32 (G. max)
CNT0022384, E-value = 4e-18 (A. trichopoda)
CNT0010786, E-value = 2e-11 (S. tuberosum)

Expression of CNT0027330

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (49 aa)
GCGLALPYIYIYIYIYIYIYIYIYIYIYIYISCDGIAKIYLTCAAAMRE*

>peptide 2 (91 aa)
WVRFSAAIYIYIYIYIYIYIYIYIYIYIYIYIMRRNCENIPNLRRGDAGVTRKLRLEAWDWRASTNTYKYLPLHNTSVGLNALRIHGIILW*

>peptide 3 (51 aa)
MGLARKHKHLQIFTFTQHFGGFERFTNSRHYLMVSPQYVPEIIAYLVHTTR*

Sequence

>CNT0027330
TGGGTGCGGTTTAGCGCTGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATGC
GACGGAATTGCGAAAATATACCTAACCTGCGCCGCGGCGATGCGGGAGTGACGCGCAAGCTCAGATTGGAGGCATGGGACTGGCGCGCAAGCACAAACAC
TTACAAATATTTACCTTTACACAACACTTCGGTGGGTTTGAACGCTTTACGAATTCACGGCATTATCTTATGGTAAGCCCCCAATACGTACCAGAAATCA
TCGCGTACTTAGTTCATACCACAAGATAGGGCCTGTGAATTCGCAAAGCACACTAACC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0201700-01 Os01g0201700 protein protein coding CNT0027330 169 83 UTR3 Trans
OS01T0773350-01 ncRNA CNT0027330 146 72 noncoding Trans
OS01T0773350-01 ncRNA CNT0027330 140 70 noncoding Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0027330 109 63 UTR5 Trans