« Back to Glycine max search


Detailed information on CNT0002737


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006210, E-value = 1e-07 (V. vinifera)

Expression of CNT0002737

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTLRRVLGLSSDFFLNSGFSDSRPRRSLFFPSLWNL*

>peptide 2 (32 aa)
AEVFQLLLRRLLIQRVSSVYHADVLATAVLHL*

>peptide 3 (29 aa)
MICKFYVREQVAILQIQFRGIMNRVHQLY*

>peptide 4 (77 aa)
MGFWTLLEGFLLFANALAILNEDRFLARRGWTLAEMTGPQRNSLKGQVIGLIYACQFLRLPLILFNVITIIVKLFSG*

Sequence

>CNT0002737
GCGGAGGTGTTTCAGCTATTGCTGCGTAGGCTTCTGATCCAACGGGTATCTTCAGTTTATCATGCTGACGTGTTAGCTACGGCCGTTCTGCATCTTTAAA
TGACTCTTCGGAGAGTCCTAGGATTGTCTTCAGATTTCTTTCTTAATAGCGGGTTTTCAGACTCGAGACCTCGCAGGTCGTTGTTTTTTCCTTCTCTGTG
GAACTTATGAAGAAGCTTTCCTCTGAGCACTAAGATGCACACCCTTTGTGTTTCTAGCAGAAGATGGGGTTCTGGACTCTGCTAGAAGGTTTTCTGCTCT
TTGCAAATGCATTGGCAATTTTGAATGAGGACCGGTTCCTTGCTCGAAGGGGATGGACATTGGCAGAAATGACAGGACCACAAAGGAATTCTCTTAAAGG
GCAAGTAATAGGGCTTATATATGCCTGTCAATTCTTGAGACTTCCCCTTATTCTCTTCAATGTTATCACCATAATTGTGAAGCTGTTCTCTGGATAGCTT
AAAAAGAGTGGTATCATGCTTTATGCTTTGTTCTGTGTATGATATGTAAATTTTATGTTCGTGAACAAGTTGCAATTCTACAAATTCAATTCAGAGGCAT
AATGAACAGAGTACACCAGTTGTATTAGTTTTTTTATTGAATGTGTCCTCTGTCTTGATTATCATTCTTAATTCCCTTTGTATTTGTAATTTCTTTTGGT
CTATTAACGTATACATATATAACTATGCTAACACAGTTTAAACACGAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G14960.2 Uncharacterized protein protein coding CNT0002737 295 191 CDS Trans