Detailed information on CNT0027503


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0D3B6|PRR37_ORYSJ, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005124, E-value = 2e-10 (V. vinifera)
CNT0043564, E-value = 9e-09 (A. thaliana)
CNT0034233, E-value = 4e-11 (P. patens)
CNT0019093, E-value = 6e-10 (Z. mays)
CNT0000126, E-value = 6e-10 (G. max)
CNT0022384, E-value = 2e-09 (A. trichopoda)
CNT0015823, E-value = 2e-10 (S. tuberosum)

Expression of CNT0027503

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MFLAIEPIKSAARTLDSSRFSIAASFELFCSGYSFRLSVGLMDLSFGED*

>peptide 2 (31 aa)
MVTIYCCIYLTSGGSLVHKCYQVDQLIDLET*

>peptide 3 (52 aa)
MNIMKYWARVLYEVALYFTRLSPLCCIVSHFISLFFSCCISWRRPVLCRMKC*

>peptide 4 (56 aa)
MSLPLPLPLPLPPPGPLLLMVPLAISIFGRSAFTAVVLPFCPLLPLLLPELLPLTP*

>peptide 5 (33 aa)
MWLISTTCVSQLQWSAAARHGRKSKKTSDPTNT*

>peptide 6 (30 aa)
MDANLRRPVTQQTHDIDNSAVPTGQSTLVS*

>peptide 7 (33 aa)
MITPSSSSSSLLPLLLLDSSPLFDLAHFSAVST*

>peptide 8 (32 aa)
MMESMVVGCRMHGMLLIDRPRKKNHYLLSTNC*

>peptide 9 (38 aa)
MRKIQEMSLARNFSNTAMGPKTCNFLEDYLVRFLLEIR*

>peptide 10 (46 aa)
MILLNREIPDTPGITTSVKTRSMLFCISSRYVHACWPFSAGMTSQK*

>peptide 11 (45 aa)
MNHIEGPRIHHSHVTHRNEHNEVLGEGVVRGCSVLHQAEPSLLHC*

>peptide 12 (69 aa)
MADSHQKETDPIQSLIKHIIYIYIYIYIYMYVCMYVSLYIKRASYPNCTHPRRKVKDSVSRVKLNCRSK*

>peptide 13 (31 aa)
MDLPEHLIYKKNWTNNNLRCGTVSTHAAIGS*

>peptide 14 (43 aa)
MGLTKKSTAPFDKHLKTVPIASFEDITDHWNILANIVVHDPTQ*

>peptide 15 (86 aa)
MQLKTGYLFSEVALFPFLSKLDHCSHSMLSLSEAFQIHVIATAASTSIATSRSTFVDGAISDLHIWPFSIYSSRTPILPIASIVTA*

>peptide 16 (36 aa)
MYVCFSIYKKSLLSKLYSPAPKSKGQCFKSKIELPL*

Sequence

>CNT0027503
CCTACCAAAGGCATAGAAATTTGACGAGCCTTGTCAATCACCTGATTACAGATCATAGATAATAAAATACTCCACTCCAGTATATTTAGATTAAGGAGAA
ACAGTGACAGCAAGTTCTATCTCAAGGCAAGGCATGTGGCTCATTTCAACAACATGCGTGAGCCAACTACAGTGGAGTGCTGCTGCCAGACATGGACGCA
AATCTAAGAAGACCAGTGACCCAACAAACACATGACATTGACAATAGTGCTGTCCCTACAGGGCAGAGCACTCTCGTCTCATAGTAGCAGTACATGACAT
GCTTAAATATGGAGTAGTACGTTCGAGCTTGACTCCACAGGCACATACTACTGGAGTAGTATTATAGGTCCACCTGAAGTGGAGTCAGCCACACCATATT
CTTCTACTAGTAGTAACGCAGATCACCATTATCATATCTTCATATATAGATAGGGGATAAATAGGATAGGAGTTCCTTATTTATTCCAGACTCTAAATAT
GATGGAATCAATGGTGGTGGGATGCCGGATGCATGGGATGTTGTTGATCGATCGGCCAAGGAAGAAGAATCATTATCTGTTGTCTACTAACTGTTAATTA
GCTGTTTGGAGTCCAAAGCCATCGCGTAGGTAGGTAGGTAGGTCATCTGTCCGCTGCCGCTTCGCGCCCACCACCCTGCTGTTGTTGGTCTTGCACAGCT
TGCCGCACGAACTGTCCGCGGACCCTTGGCCGCTGCTCGGCCAGCCTCTTTCTGCTCTGGTACCGCACCTGAAAATGGCAGACAGCCATCAGAAAGAAAC
CGATCCTATCCAAAGCTTAATCAAGCACATCATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTTTCTCTATATATAAAAAGA
GCCTCCTATCCAAATTGTACTCACCCGCGCCGAAAAGTAAAGGACAGTGTTTCAAGAGTAAAATTGAATTGCCGCTCTAAGTAGCTACCATTAAATTATG
AGAAAAATCCAAGAAATGTCATTGGCAAGAAATTTCAGCAACACGGCTATGGGACCAAAAACGTGCAACTTTTTGGAAGATTATCTTGTGAGATTCCTTT
TAGAAATCAGATAATACTAGTATATAAACAAATTATATTCATGCCCGATCCCATTTAGCTAGTCGTTTGGGAGAAACTTCCAGTAATATGCTTTTGACAA
CTACTTCCAGTAACATGTTCTTTAGCTAATTTAGACGAGTTAAACAGGAATGCTAAAACCAAAGGAACAGAAAACATGCAATTGAAAACAGGCTACCTTT
TTTCCGAAGTTGCGCTCTTTCCTTTTCTGTCTAAACTTGATCACTGCAGCCACTCTATGCTCTCGTTGAGTGAAGCGTTTCAGATACATGTCATTGCCAC
TGCCGCTTCCACTTCCATTGCCACCTCCAGGTCCACTTTTGTTGATGGTGCCATTAGCGATCTCCATATTTGGCCGTTCAGCATTTACAGCAGTCGTACT
CCCATTCTGCCCATTGCTTCCATTGTTACTGCCTGAGTTGCTTCCATTGACACCATAGTTGGCAGCATGACCTTCGACAGGAGGATCAAATACATTGGAT
GAACCACATTGAGGGGCCCCGGATCCACCATTCTCACGTGACACATCGAAATGAACATAATGAAGTATTGGGCGAGGGTGTTGTACGAGGTTGCTCTGTA
CTTCACCAGGCTGAGCCCTCTTTGCTGCATTGTTAGCCACTTCATCAGTCTTTTCTTTTCCTGTTGTATTAGCTGGAGACGTCCAGTGCTGTGCAGGATG
AAATGCTGATGTGTGTCCATTAGCCTTAACAGCTGAGGGTGACATTACTCTCTCCTTATTTGTACTAGGCTTTGTCACAACGTTCTTTGTAGTGGAACCC
ATGTCATTGTTATTGCTACTACCATTAGAACCTTGTTTTATTGGTGCAGCATCTGAGTTTGACTTCATGTTGTAAGCAGAATCCGTTTTCATAGCCTCTG
AGCTATTATCATGCAGCGAACAGCTTCCCATGAATCCTGTCCCACCTTGATTGGAAGCCACAGGTGTATGGTACCTTGCAACAAAAAGATCTGATCGTCT
CAAAACATTCCGTTGTTCCTCTTGGATTGCGTTTGCACCATCCCCAGTCGATCTTGACCTTTTCAAACTTAATTCAAGTGATGGCATAATATTATCACGG
TTCTTATCTTTCCCTTCTGGCACTTTGGAGGAGCAATTAGGGGCATTTGCGGCTCTTGCTGCCTGTTGTGCATCCATGTTTTTGGCCATCGAACCAATTA
AGTCAGCAGCTCGAACACTTGACTCCTCCAGATTTTCCATCGCTGCCTCCTTTGAATTGTTTTGCAGTGGATATTCATTCCGTCTATCTGTTGGTTTGAT
GGATCTCTCATTCGGAGAGGATTGATAAGCTGTGTTTAAATTTCTAGGAGAACCTATTTCCAAGTCCTTCCCCTTGAACATACAATACCATTAGTTTCTT
TTTGTTTCTTGGAATTTTTGTTGCTTGTACATGGTAACCATCTATTGCTGCATATATCTGACTTCAGGTGGATCACTTGTGCACAAGTGCTATCAGGTGG
ATCAGCTAATTGATCTGGAGACATAGCCTGTGGACTGTCAATCTCAACAGCGCGCTTTTTTCATACTTGAGTGCCACTGCCGTTATCACTGCCATCTCTT
GCATTAAGTCCCATGATTACACCATCGTCGTCATCATCGTCATTGCTGCCATTGTTATTATTGGATTCATCCCCACTTTTTGATTTGGCACACTTTTCAG
CAGTCAGTACTTGATGGATTTGCCTGAACATCTAATATATAAGAAAAACTGGACCAACAACAACTTACGCTGTGGCACCGTCTCCACACATGCTGCCATA
GGTTCTTAAGTTCATTCTTACGTATGGGCTTGACTAAGAAGTCAACAGCGCCCTTTGACAAACACTTAAAAACTGTACCCATAGCATCATTTGAAGACAT
CACTGATCACTGGAATATTCTTGCAAATATTGTGGTTCATGATCCTACTCAATAGAGAAATTCCAGATACACCAGGCATAACAACCTCTGTCAAAACAAG
ATCAATGCTGTTTTGCATATCTTCTAGATATGTCCATGCTTGCTGGCCATTTTCAGCAGGGATGACTTCACAGAAATAAATTAATAACACTCAGTCAAAG
ACCAACAAAGATAAAATATCTTGTGCATTAAAAAAAAACCTTGGCCCCAAGGGGAA

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0773350-01 ncRNA CNT0027503 97 66 noncoding Trans
OS07T0695100-01 Two-component response regulator-like PRR37 protein coding CNT0027503 5644 2059 CDS_UTR Cis
OS07T0695100-01 Two-component response regulator-like PRR37 protein coding CNT0027503 695 255 CDS Cis
OS07T0695100-01 Two-component response regulator-like PRR37 protein coding CNT0027503 590 208 CDS Cis
OS07T0695100-02 Two-component response regulator-like PRR37 protein coding CNT0027503 695 255 CDS Cis
OS07T0695100-02 Two-component response regulator-like PRR37 protein coding CNT0027503 590 208 CDS Cis