Detailed information on CNT0028316


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 3e-18 (V. vinifera)
CNT0042889, E-value = 1e-23 (A. thaliana)
CNT0033726, E-value = 2e-16 (P. patens)
CNT0019000, E-value = 1e-08 (Z. mays)
CNT0002061, E-value = 2e-07 (G. max)
CNT0023953, E-value = 1e-20 (A. trichopoda)
CNT0012080, E-value = 8e-07 (S. tuberosum)
CNT0038582, E-value = 8e-13 (S. moellendorffii)

Expression of CNT0028316

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKNKVVKSEGHLVISTFQSFCLDLLVLLLASQTLCLLNSLM*

>peptide 2 (61 aa)
MKHDLQRWCFASWKCCMICIHPSVLSLSLSLSLSLSLLSLSLSLSRTCHHLEWFIPMIVHV*

>peptide 3 (36 aa)
MLFILFKKPECIEVVPFGLHDSRPYHKTKSLSTYEP*

>peptide 4 (57 aa)
MVFCFLEVLYDLYPSIRPLSLSLSLSLSLSPLSLSLSLSYMSSFGMVHSNDCACVAS*

>peptide 5 (29 aa)
MLRGWRNTDMSVRAIGRTMVSAAASALEK*

>peptide 6 (61 aa)
MAADVVIDVQNNSNISTLSIPRRFKIPQLMPLHCLSLFCVNISCRYSFSHLVYHLFLLPPV*

>peptide 7 (50 aa)
MDVVDPVKCSISTIKICMAPHIILKTHLGSKETIYVGTNIEWSLFFNLRT*

>peptide 8 (86 aa)
MMKLDIQRWCLAFWEVLYPSLSLSRSVRLSLSLSLKYGNGNGLSIFPTVFIPNSHTSSFPCLHICSYQPVPSNIRLCTLPSSQEVV*

>peptide 9 (30 aa)
MVFGFLGSAVPISLSLSLCASLSLSLSQIW*

>peptide 10 (47 aa)
MHKLYVFSIFLVYYCPFYHLNFLVNPKLHVQELSKLLQLIPLLKPIR*

>peptide 11 (30 aa)
MTFLFKKGKFSLARFPLLFSWLKFSLFKTT*

>peptide 12 (92 aa)
VNMPRRVLILIYKLDARLLCHLEMQRCIYVLSQRALGSYCYIRSGSSLSHFVFLIIFYHLPYNVMNQEPAIGMILTTIWFILFFFLPCCFGW*

>peptide 13 (71 aa)
MMMHCPMMKTYYAEMAHGFLLLLGSSSPLYLPPHVTAAAAAVGNCHQKDLSGIQVPLSFSGKIRYHICCHK*

>peptide 14 (36 aa)
MNQEPAIAMVLITSRFIFPYFYNVALLGSSISKCIA*

>peptide 15 (47 aa)
MSPSMDGPFSGAPVSYAFRLFRFHCGMVPLISLVFAWIRHWPNDDCD*

>peptide 16 (32 aa)
MALGLLSSLKIHARVGNLSSKDLFGMQVLHKF*

>peptide 17 (43 aa)
MFRTIQISPPCLFLVDSKYLNLCHYIVYLFFVLTYLVDIPSLI*

>peptide 18 (45 aa)
MTVVHIIKPNHYPLMSHDILRNNSFASFLNPLHTINQERDFPSFL*

>peptide 19 (35 aa)
MPAYLQLPTCALKYKAVYFTIIPGSGLASQILHTI*

>peptide 20 (56 aa)
MRGFSFALPSVHFCCGLCRFVLLNCLLCFYSNLSVCCSASIFVSFLTDRHPAELTL*

>peptide 21 (52 aa)
MLLCLVVAYLNALPNNKNLICIDGTWSSLLPQNPCTSREFVIEGSVWNAGTA*

Sequence

>CNT0028316
GTTAACATGCCTCGTCGAGTTCTAATTTTGATTTACAAATTGGATGCCCGTCTCTTGTGTCATCTTGAAATGCAGAGGTGCATTTATGTCTTAAGCCAGA
GGGCATTAGGATCATACTGTTACATACGTTCTGGTTCATCCTTGTCTCATTTTGTATTCCTTATTATTTTTTATCATCTCCCGTATAATGTGATGAATCA
AGAGCCTGCAATAGGCATGATCTTGACTACCATCTGGTTCATATTATTTTTTTTCTTACCATGTTGCTTTGGTTGGTAGTAGCATGATGATGCATTGCCC
AATGATGAAAACTTACTATGCAGAGATGGCACATGGTTTCCTCCTCCTCCTCGGCTCCTCCTCCCCCCTCTATCTCCCCCCTCATGTGACAGCAGCAGCA
GCAGCAGTTGGGAATTGCCATCAAAAGGATTTGTCTGGAATACAGGTACCGCTAAGTTTTAGCGGGAAAATCAGATACCATATATGTTGCCATAAATGAA
ATGCATAAGTGAGTCTTGAGGGCATAACATTCCTTGCAAATGCACAAGCTGTATGTTTTTTCGATATTTTTAGTCTACTATTGCCCATTTTACCACCTCA
ACTTCCTGGTCAACCCCAAACTACATGTTCAAGAACTATCAAAGTTATTGCAACTCATCCCATTGCTGAAACCAATCCGGTGAAATGCGTACAAATGGAC
GTAGTGGACCCGGTGAAATGCTCAATTAGCACAATAAAAATTTGCATGGCTCCTCACATCATACTCAAAACACACCTAGGCAGCAAAGAAACTATTTACG
TGGGTACAAATATTGAATGGTCACTGTTTTTTAACTTGCGGACTTGAGCAAGAGTTGAGGGGGTTAATCAAAATGGACTTAGTACTTTCAAAATTTTGTT
CCCTGCAAGTTTGAATATGTTGGCTTGATGAGAGGCTTTTCATTTGCACTTCCTTCAGTACATTTTTGCTGTGGTTTGTGTAGGTTTGTTCTGTTAAACT
GTTTATTGTGTTTCTACTCTAACCTTTCTGTTTGTTGCTCGGCCAGTATTTTCGTCTCATTTTTAACTGATAGACACCCAGCAGAGCTGACTCTTTAACT
CTTCCCAGATGACGGTTCCTAGATACTCTTATTGACTTATTCTAAGTCAGCTTGTGTTTGTGCTCCAAGTGATAAGTTCGACACCTTTTCTAGGCTAGAG
CTTCTGAGGGTTTTCATTCTGCAGATTGACTAGTTTATTACTTTATTTACACTGTGATAAGTTCATTTGTTATTTTTTTCATTGCCATGTTATTTATTTT
GTTCAAGAAACCAGAGTGTATTGAAGTGGTACCTTTTGGACTTCATGACAGTCGTCCATATCATAAAACCAAATCACTATCCACTTATGAGCCATGATAT
TTTGAGAAATAACTCATTTGCTTCCTTTCTTAATCCCCTTCATACAATCAATCAAGAACGTGACTTCCCCTCTTTTTTATGACTTTCCTTTTTAAAAAAG
GAAAATTCTCACTTGCACGATTTCCCCTCCTTTTCTCTTGGTTGAAGTTTTCCTTGTTCAAGACCACGTAGTCATATATGTTTCCCCACCTTTGCAGAGC
ATCTGGATTTGATTCTGAATTGGACCAATGTTTTATTTGATTCAGACTAGCAATTTCACCTAAATTTAGTACCTTCTGCAGTAGAATAACAGGTACCATG
CTTTGATTTAGTTGATTTAAATGCCCAGTGATGAAACATGATTTACAGAGATGGTGTTTTGCTTCCTGGAAGTGCTGTATGATCTGTATCCATCCATCCG
TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCGTACATGTCATCATTTGGAATGGTTCATTCCAAT
GATTGTGCATGTGTAGCTAGCTAGCTTAACCTTCCATCATCATTCCAGGAATTCATTCAGCCTCACATTTCCTTGCTCACAATTTGAGGCTGTCTCCTGC
ACCATCAATGGATACTGTGTATGTGAGTTCTGAGGGCATTATTTTTCTTATGGCACGTTTGCCAGTTCGTTTGAGATGAGTCCATCCATGGATGGTCCTT
TTTCTGGTGCACCTGTCTCTTATGCATTTCGCTTGTTTCGTTTTCACTGTGGCATGGTGCCTCTGATCTCTCTCGTTTTTGCCTGGATTCGCCATTGGCC
CAATGATGATTGTGACTAAGACCCTCGTGAATCGATAAATCGATTGGTTGATGGATGGATGGATAGATAGATCGGCTCGGACTTGAGCTCTAATGGGGTT
GCCCTTTGCATCTGCAATGGGTTGAGCTGAAAATGGCTAGTGTGGCGTTGGCTCCTCAATGATCTGGGCGCTGAAGCATGCTCAGGGGTTGGAGAAACAC
TGACATGTCGGTCCGCGCAATTGGCAGGACCATGGTTTCTGCTGCTGCTTCTGCTTTGGAAAAGTAGCTCTCTTTCTTTCTTTTTCTCTTCTTCTTCTTC
GTCCTCCTCCGCTCCTGCCACTGCTGTGGCAGTTGTCGTCGTTGTCGTCGTCATCGATCATCATCATCCAGTTCTGCCGTTCCCTTGAGACATGCTTCAG
TGCCAGCATTGAGGGCTGCCGCATTAGCCAGCCTAAGATGAAAAACAAAGTTGTGAAATCAGAGGGCCATTTGGTAATATCGACCTTTCAATCTTTTTGT
TTGGATCTTTTAGTTTTGTTGCTTGCCTCTCAGACTCTGTGTCTCCTTAATAGCCTGATGTAACTCCCAGAAATTTACTATCTGACGGAGTTGGTCCATT
GCCGTGCAAACAAGTACACACTTAATGTATCATGGCTGCAGATGTAGTGATTGATGTTCAGAACAATTCAAATATCTCCACCTTGTCTATTCCTCGTAGA
TTCAAAATACCTCAACTTATGCCACTACATTGTTTATCTCTTTTTTGTGTTAACATATCTTGTCGATATTCCTTCTCTCATCTAGTTTACCACCTTTTTT
TATTACCTCCTGTATAATACGATGAATCAAGAGCCTGCGATAGCCATGGTCTTGATTACCAGCAGGTTCATATTTCCATATTTTTACAATGTTGCTTTGC
TTGGTAGTAGCATATCTAAATGCATTGCCTAATAATAAAAACTTAATATGCATAGATGGCACTTGGTCTTCTCTCCTCCCTCAAAATCCATGCACGAGTA
GGGAATTTGTCATCGAAGGATCTGTTTGGAATGCAGGTACTGCATAAGTTTTAGCGGGCAAATCACTGACCATATATGCCATCAATGAAATGCATCAGAG
AGACTTGCCATCAATAAAGTTTCCCTGCACATGCACAAGTTTTTCACCAAGGTTTAGCACTACGTAGGTGCCATGCTTTGATTTGAAGCCCAATGATGAA
ACTTGATATACAGAGATGGTGTTTGGCTTTCTGGGAAGTGCTGTACCCATCTCTCTCTCTCTCTCGCTCTGTGCGTCTCTCTCTCTCTCTCTCTCTCAAA
TATGGTAACGGAAATGGTTTGAGCATTTTTCCGACCGTTTTCATCCCCAACTCGCACACATCATCATTCCCATGCCTGCATATTTGCAGCTACCAACCTG
TGCCCTCAAATATAAGGCTGTGTACTTTACCATCATCCCAGGAAGTGGTTTAGCATCACAGATCCTTCACACAATTTGAGGCTGTCTCCCGCACCATCGA
TGGATATTTGTATGAGCTCTGAGGGCATTCTTGTTACCATTTTCATGTTTGCTTGAGATGAGTCCATCTGTGGATCGTCCTCCCTGGTATTTATGTAAAA
ATTCGTAATATGTGATGCTCTCTTTATCTCGTTTATATTTGAGAAGCTTTTGCCGATGATCATGTGGCCATGGTTTAGAGAGATTAGAACTGGCCTACCG
TTAATGTGATTTTTATTTTTCGTCAAATGTATAATCTCGCAGAGGACTCCTGAGGAAACTATATATCAAGTCTGTGCGTTCCTTTTCACATTGTTGTGTT
TTTACCGTGTTTTTTACCCTGTTTGTACAGCATACTCTGATCACAGCGTTGTGATCAGTTTGAAAAGTAAGATATTTTTTCTTCGGATTATCCATGTATA
CGGTCCATTGAAAAACATTGAAATTTCTAGTTCATACTTCTCTTTGTCCACCTATTTTTTTTCAACGAAAACAAGCACAGATGGAATGGAGACTATCGAT
GTGTTTCATAATAGCAACTCAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0028316 98 48 CDS_UTR Trans