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Detailed information on CNT0028472


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 1e-35

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005932, E-value = 2e-48 (V. vinifera)
CNT0033455, E-value = 2e-47 (P. patens)
CNT0019050, E-value = 1e-73 (Z. mays)
CNT0000474, E-value = 1e-27 (G. max)
CNT0009867, E-value = 7e-57 (S. tuberosum)
CNT0035798, E-value = 8e-35 (C. reinhardtii)

Expression of CNT0028472

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HLFIIVLPCCSTTAKRFRHHQTRLKDTHYR*

>peptide 2 (94 aa)
MAEDLLATTEAEHQVEGGLLLDVVVGKGAAVLQLLASEDETLLVRGDALLVLDLGLHIVNGVRGLNLEGDGLAGEGLHKDLHLHTQLPKHGQQL*

>peptide 3 (83 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICICTHNYRSMVSNYEHEIITIPSKYSRNQSIKLFQYVRYTT*

>peptide 4 (34 aa)
MNRVESMQLEGLNQKQPKQNIPEAATWINEKNRD*

Sequence

>CNT0028472
ATCACTTATTCATTATAGTTCTTCCATGCTGCTCTACCACAGCAAAACGTTTCAGACACCATCAAACCAGACTTAAGGATACACATTACAGGTAAATAGT
ACACAATGAAACGGGACACGACCAAGGACCAGACCAGACAACCATAGCTCCATTGGGGAAGACAAATAGGCAGACTTGTGAACCCTAGAACAGCAGCAGC
TCCATGGCTGAGGACTTACTGGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCC
AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCAA
CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCACACACAATTACCGAAGCATGGTCAGCAACTATGAACATGAAATTAT
AACAATACCAAGCAAGTACAGCAGAAATCAGTCAATCAAATTATTCCAATATGTTAGATACACGACCTAAACCACAATAACATCAGTGTACCTATCAACA
CCAACAGTGACCTAACAAAATAGAGAGACGCACCGTGCTCGAGTTCACAAAAATAATCTGCAGGTCTATGAACTACTAGAATTCCATCGGCAAACTGATT
CAATAACTACTAGCACTATCCCGAGAGCACATAAGGCAGGTTAATTAACATAGGCTAGAATTTACAGGTGCAACAGTTGATAAGATAGGCATAAGCAAGT
AAAATATCCTGAAAGCTATGCTATGTAATCACTAATCAACAAGACGCAGCCCTTAGATTAAACATGAACAGAGTAGAATCTATGCAACTAGAGGGACTGA
ATCAAAAACAACCTAAGCAAAATATACCTGAAGCTGCTACTTGGATCAACGAGAAAAACAGAGACTAAATCCTACTAATTGAACAGATCGGAACAAATCA
CAACCCTAGCACAGTTCTACTTCTAGATCCGAACCAATCAATACTTGGACCACGAACAGCATCGCTCATAATCACAGATCCAGCATACCACGCGAACCCC
ATCTAAACCTGTTCAAATCTACCACAGATCGCAAAACGGAGACTAACCACAACATCTCACAATCACGAACAGGCCGGGAAATCAAATCAAACGCGAGGAA
CGGAGAGGATCAGAAAATCGCATACCTTGAGAAGGCGATTCGACGCTTCGCTTCGAGGGGAGATTTTTTTTTCTCTGCGATTTTGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS06T0681400-01 Polyubiquitin protein coding CNT0028472 1334 478 CDS Cis
OS06T0681400-01 Polyubiquitin protein coding CNT0028472 906 311 CDS Cis