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Detailed information on CNT0028514


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-35

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0009867 in S. tuberosum

Most similar lncRNAs:
CNT0005932, E-value = 2e-35 (V. vinifera)
CNT0033455, E-value = 5e-45 (P. patens)
CNT0019050, E-value = 7e-72 (Z. mays)
CNT0000474, E-value = 2e-32 (G. max)
CNT0009867, E-value = 3e-65 (S. tuberosum)
CNT0035798, E-value = 5e-33 (C. reinhardtii)

Expression of CNT0028514

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICTHNYRSMVSNYEHEIITIPSKYSRNQSIKLFQYVRYTT*

>peptide 2 (34 aa)
MNRVESMQLEGLNQKQPKQNIPEAATWINEKNRD*

>peptide 3 (36 aa)
YGCLVWSLVVSRFIVYYLPVMCILKSGSSRRSASHP*

Sequence

>CNT0028514
CTATGGTTGTCTGGTCTGGTCCTTGGTCGTGTCCCGTTTCATTGTGTACTATTTACCTGTAATGTGTATCCTTAAGTCTGGGTCTTCACGAAGATCTGCA
TCCCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGA
TGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTT
GCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCACACACAATTACCGAAGCATGGTCAGCAACTATGAACATGAAATTATAACAATACCAAGCAAGTAC
AGCAGAAATCAGTCAATCAAATTATTCCAATATGTTAGATACACGACCTAAACCACAATAACATCAGTGTACCTATCAACACCAACAGTGACCTAACAAA
ATAGAGAGACGCACCGTGCTCGAGTTCACAAAAATAATCTGCAGGTCTATGAACTACTAGAATTCCATCGGCAAACTGATTCAATAACTACTAGCACTAT
CCCGAGAGCACATAAGGCAGGTTAATTAACATAGGCTAGAATTTACAGGTGCAACAGTTGATAAGATAGGCATAAGCAAGTAAAATATCCTGAAAGCTAT
GCTATGTAATCACTAATCAACAAGACGCAGCCCTTAGATTAAACATGAACAGAGTAGAATCTATGCAACTAGAGGGACTGAATCAAAAACAACCTAAGCA
AAATATACCTGAAGCTGCTACTTGGATCAACGAGAAAAACAGAGACTAAATCCTACTAATTGAACAGATCGGAACAAATCACAACCCTAGCACAGTTCTA
CTTCTAGATCCGAACCAATCAATACTTGGACCACGAACAGCATCGCTCATAATCACAGATCCAGCATACCACGCGAACCCCATCTAAACCTGTTCAAATC
TACCACAGATCGCAAAACGGAGACTAACCACAACATCTCACAATCACGAACAGGCCGGGAAATCAAATCAAACGCGAGGAACGGAGAGGATCAGAAAATC
GCATACCTTGAGAAGGCGATTCGACGCTTCGCTTCGAGGGGAGATTTTTTTTTCTCTGCGATTTTGG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS06T0681400-01 Polyubiquitin protein coding CNT0028514 1378 506 CDS Cis
OS06T0681400-01 Polyubiquitin protein coding CNT0028514 906 311 CDS Cis