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Detailed information on CNT0028521


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 4e-20 (V. vinifera)
CNT0042553, E-value = 2e-19 (A. thaliana)
CNT0035158, E-value = 9e-12 (P. patens)
CNT0021574, E-value = 1e-20 (Z. mays)
CNT0002248, E-value = 6e-22 (G. max)
CNT0022384, E-value = 2e-18 (A. trichopoda)
CNT0010786, E-value = 9e-12 (S. tuberosum)

Expression of CNT0028521

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MHGLYIYIYIYIYIYIYIYINHAATGPLKKKVCSIFSPGW*

>peptide 2 (52 aa)
YIYIYVCMHIYVLKHIYAWFIYIYIYIYIYIYIYIYKPCSNRAIKKKGLLDL*

>peptide 3 (35 aa)
YIYICMYAYICIETYICMVYIYIYIYIYIYIYIYI*

Sequence

>CNT0028521
TATATATATATATATGTATGTATGCATATATATGTATTGAAACATATATATGCATGGTTTATATATATATATATATATATATATATATATATATATATAT
ATATATATAAACCATGCAGCAACAGGGCCATTAAAAAAAAAGGTCTGCTCGATCTTTAGTCCCGGTTGGTAACACCAACCGGGACTAAAGATGGCTCAGC
C

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0201700-01 Os01g0201700 protein protein coding CNT0028521 112 62 UTR3 Trans
OS01T0773350-01 ncRNA CNT0028521 100 50 noncoding Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0028521 105 99 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0028521 101 54 UTR3 Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0028521 98 49 UTR5 Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0028521 108 56 UTR5 Trans
OS12T0639800-00 Os12g0639800 protein protein coding CNT0028521 102 51 UTR3 Trans