Detailed information on CNT0028845


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005102, E-value = 2e-06 (V. vinifera)
CNT0002538, E-value = 1e-10 (G. max)
CNT0008188, E-value = 3e-08 (S. tuberosum)
CNT0039900, E-value = 3e-11 (S. moellendorffii)
CNT0036599, E-value = 2e-09 (C. reinhardtii)

Expression of CNT0028845

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RRRLRFDGARGGADLRGRGRRAVGAAAAAV*

>peptide 2 (160 aa)
MFFASTSKSKYDGCKVKLNGPDHICFSVNKCGDTMASKGWIADRVVDWLKEKPTLGPKELQEKVNKKYKMDVPYFRVFRAKEKVMDMIYGKWDESYDILP
TYKEALLKAIPGSIVELDTEEHNGDVCFRRFFVALKPCIDGFLQGCHPYIAMDSTHLIGR*

>peptide 3 (55 aa)
MWSGPAPIYGKLWGAATACCGGGDGLLWGRRQRAVGRGAAAGATRGDGGRASTRR*

>peptide 4 (54 aa)
MQQRDRGSCRWCLSRSGTPRMHEALVEEHEEEVSWHIVFSEHVGSCQELHTSEV*

>peptide 5 (160 aa)
MTSKHLWPLVDVGYKIKKPKLRRKPGRPRVSRMKASDEVAPRKKRKCSECHELGHTAKYCQRGLTASQKRKKATQESSSDAHASNASAGGCEGEGDGEGT
MNARGGRASGRGRERGRGRARGRASSSGGGGGGGGDGGGGGGGGGEGGGGGGGGGGAGGDG

>peptide 6 (64 aa)
MRLPQGKKENAQSVMNWAIQLSIAKEALQLVKRGKKPLKRVAVMHMHLMQAQVDVKGKGMGKVP*

>peptide 7 (40 aa)
MSSLHCNGFNSLNRKVKRSVGSCCCSRWPQLAISSGLWGD*

>peptide 8 (248 aa)
MVYSELEASHRYSYRIGHQHRCSKGIEGAVDGVYPGVEHRECMRHLWKNMKKKYHGTLFSQNMWGAAKSCTLQRYEYHMDKIKEKCPDAIQWLDENHPYV
WSRSKFSDLCKVDYINNNLSESFNSWVSKTKDLQIVDMHEKIRHMIVAKFDLRAKIARNMEGKIIPAITKDLNAQSKAIKNHEVLRCGDGTAEVTVSTIT
HAVNLNERTCSCRAWQISGKPCSHTLAFIAKLSKQVHMGDFVDECFSV*

>peptide 9 (31 aa)
MEGIPTSSEVADIDAPSTMQGIPTIQRCAVS*

>peptide 10 (68 aa)
MIMLSKLLKKTRIGLRQSVGEQRRVASGCFLHPPASPNMMDARLSLMGQTTFVFQSISVVIQWLLRDG*

Sequence

>CNT0028845
GGCGGCGGCGGCTGCGGTTTGATGGGGCGCGGGGCGGCGCCGATCTGAGGGGACGGGGACGGCGCGCTGTGGGGGCGGCGGCGGCGGCAGTTTGATGTGG
AGCGGGCCGGCGCCGATCTACGGCAAGCTGTGGGGCGCGGCGACGGCTTGCTGTGGGGGCGGCGACGGCTTGCTGTGGGGGCGGCGACAGCGAGCTGTGG
GACGCGGGGCGGCGGCGGGTGCTACACGCGGTGACGGTGGGAGGGCCAGCACTCGGAGGTAGCCGACATCGACGCTCCCTCAACCATGGAAGGGATTCCT
ACCAGCTCGGAGGTAGCCGACATCGACGCTCCCTCAACCATGCAAGGGATTCCTACCATACAAAGATGTGCTGTTTCGTGATGTTGATGAATGCAAATCA
GCAGTAACCCACCATGCAATCTTGAATGATTATGCTTTCCAAACTGTTAAAAAAAACAAGGATAGGTTTAAGGCAAAGTGTAGGCGAGCAAAGGAGGGTT
GCAAGTGGATGTTTTTTGCATCCACCAGCAAGTCCAAATATGATGGATGCAAGGTTAAGCTTAATGGGCCAGACCACATTTGTTTTTCAGTCAATAAGTG
TGGTGATACAATGGCTTCTAAGGGATGGATAGCTGATAGGGTGGTGGACTGGTTAAAGGAGAAACCCACATTGGGACCAAAGGAGTTGCAAGAGAAGGTC
AATAAGAAGTATAAGATGGATGTCCCATATTTCAGGGTTTTTAGGGCCAAGGAGAAGGTTATGGACATGATATATGGGAAGTGGGATGAGAGCTATGATA
TATTGCCTACTTACAAAGAGGCACTTCTGAAGGCAATCCCTGGTAGTATTGTTGAGTTGGACACTGAAGAGCATAATGGGGATGTTTGTTTCAGGAGATT
CTTTGTAGCTCTTAAACCATGCATTGATGGTTTCCTGCAAGGATGTCATCCTTACATTGCAATGGATTCAACTCACTTAATAGGAAGGTAAAGAGGTCAG
TTGGCAGCTGCTGTTGCAGTCGATGGCCACAATTGGCTATTTCCAGTGGCCTATGGGGTGATTGAAACCGAGTCTAAGGAGAGTTGGACATGGTTTATTC
AGAACTTGAAGCAAGCCATAGGTACTCCTACAGGATTGGTCATCAGCACCGATGCAGCAAAGGGATAGAGGGAGCTGTAGATGGTGTCTATCCAGGAGTG
GAACACCGAGAATGCATGAGGCACTTGTGGAAGAACATGAAGAAGAAGTATCATGGCACATTGTTTTCTCAGAACATGTGGGGAGCTGCCAAGAGCTGCA
CACTTCAGAGGTATGAATACCACATGGACAAGATAAAGGAGAAGTGTCCTGATGCAATACAATGGTTGGATGAGAATCATCCATATGTTTGGAGTAGGAG
CAAATTTTCTGATCTCTGTAAGGTAGACTACATCAATAATAATCTTTCTGAATCATTCAACAGTTGGGTGTCAAAAACTAAGGACTTGCAGATTGTGGAT
ATGCATGAGAAAATAAGACATATGATTGTTGCAAAGTTTGACTTGAGAGCCAAGATTGCTAGAAATATGGAGGGCAAGATAATCCCAGCCATTACCAAAG
ATCTTAATGCTCAGAGCAAGGCTATCAAGAACCATGAAGTTCTTAGATGTGGAGATGGCACCGCTGAGGTAACTGTATCCACCATTACACATGCAGTAAA
CTTGAATGAGAGAACTTGTAGTTGTAGGGCTTGGCAAATAAGTGGAAAGCCATGTAGCCATACTTTAGCTTTCATTGCAAAGCTTAGCAAACAAGTACAT
ATGGGTGATTTTGTGGATGAATGCTTCTCCGTTTAGAGGTTCAGGAAAGCATATGCAGGGTTATTCAACCCTATGACATCCAAGCATCTGTGGCCATTGG
TTGATGTAGGCTACAAAATCAAGAAGCCCAAATTGAGGAGGAAACCAGGGAGACCAAGGGTCTCTAGGATGAAGGCTTCTGATGAGGTTGCCCCAAGGAA
AAAAAGAAAATGCTCAGAGTGTCATGAATTGGGCCATACAGCTAAGTATTGCCAAAGAGGCCTTACAGCTAGTCAAAAGAGGAAAAAAGCCACTCAAGAG
AGTAGCAGTGATGCACATGCATCTAATGCAAGCGCAGGTGGATGTGAAGGGGAAGGGGATGGGGAAGGTACCATGAACGCACGAGGTGGACGTGCAAGTG
GCAGGGGAAGGGAAAGGGGAAGGGGAAGAGCCAGAGGGAGGGCAAGTTCAAGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGG
TGGTGGTGAAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGCTGGTGGTGATGGTGG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0776900-02 Growth-regulating factor 1 protein coding CNT0028845 115 69 CDS Trans
OS03T0578900-00 MYB family transcription factor protein coding CNT0028845 106 51 CDS Trans
OS03T0578900-00 MYB family transcription factor protein coding CNT0028845 102 71 CDS Trans
OS03T0839100-01 Os03g0839100 protein protein coding CNT0028845 107 55 CDS Trans
OS09T0298332-00 protein coding CNT0028845 98 66 CDS Trans
OS09T0512200-01 Os09g0512200 protein protein coding CNT0028845 99 71 UTR5 Trans