Detailed information on CNT0029013


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FHM7|HIR4_ARATH, E-value = 8e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0006516, E-value = 2e-06 (V. vinifera)
CNT0033199, E-value = 1e-07 (P. patens)
CNT0002951, E-value = 9e-06 (G. max)
CNT0023377, E-value = 9e-06 (A. trichopoda)
CNT0036841, E-value = 2e-06 (C. reinhardtii)

Expression of CNT0029013

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LAKFPFPNQSPIPLLNLSSYFLLSPPFRLANLHAKPRCHAMARPGWV*

>peptide 2 (66 aa)
PSKVSFPQSIANPPPQSLLLFSPLAAVSPGKSACQAAMPCHGKARMGLNLSCHIHSSRELAGRRGE*

>peptide 3 (69 aa)
MIISSLSLSLLLMLRLLCFPMLVVFGVAAVKLAHNVGKVVCLGGGCVLCVCVCVCVLVFGGGGGGSGSA*

>peptide 4 (40 aa)
MNILPFVYSLLSSNTSTFCLHTYLDDRICSFGITNNVWKV*

>peptide 5 (40 aa)
MPSRDAMPWQGQDGSEFVVSYPLESRVGRTPRRVAADLTA*

>peptide 6 (39 aa)
MQTPVRQIIVFPCLHVLHSAMVPGTKLASKQGGALPLKI*

>peptide 7 (88 aa)
MFGRYKRNRIYIKLRKLHRFIHIKSLCLIILSIRFFGKEESNDSSGSINKIGKISLNIKVSIRLAPMYVQESSNTGGTMYHQPIQQRL*

>peptide 8 (41 aa)
MVHHSMYRCHPVRILNLVKHIFVLAEVLFSLFFSLVHLFAC*

>peptide 9 (74 aa)
MLFRYPQFILFFQDWFTCLCGILVPEYCLMELGCIKRKSGIGLSASLIFRWKLTCLPNFKLCDCFFLKCWIFHS*

>peptide 10 (73 aa)
MLKELESLFGIHFKHVISLPTIHTILPRLVYMLMWNSSPRILFDGTWLYQKEIWHWAVCIAYLSLETYVLTKF*

>peptide 11 (58 aa)
MVDIIPDTSVRRAMNDINAGIIPFQVYMVLLSVCATCMMFISLFNVVMFSEVIICQTS*

>peptide 12 (53 aa)
MDLIMVTQYFDTIKELGDGSKNTTVFIPQGPGHVKDISEQIRNGMMEASSNNV*

>peptide 13 (32 aa)
MCSFVLKHFFILVLVSDKQFIICTVIYYMPSL*

Sequence

>CNT0029013
ACCTAGCAAAGTTTCCTTTCCCCAATCAATCGCCAATCCCCCTCCTCAATCTCTCCTCCTATTTTCTCCTCTCGCCGCCGTTTCGCCTGGCAAATCTGCA
TGCCAAGCCGCGATGCCATGCCATGGCAAGGCCAGGATGGGTCTGAATTTGTCGTGTCATATCCACTCGAGTCGCGAGTTGGCCGGACGCCGAGGAGAGT
AGCCGCGGATCTGACTGCATGACGCGGTCAGCGGGCCTGGATTCCTACGAAAGGAGCCGCCTTTGATCTATAATCGGAGGAATATGAAGGATTAAATACC
TTAACAACTGCCAAGGCACCATTGTTCTCTACGGTGCAGAAGCGAGCCTAAAGTGCCGCTCATTTTGGTTTATAATCGGATTAGTCTTTGTTCAGCTGAT
CTGCGCAATCCAATACCGAGTCGTGAAGGAACATGCTGATGATGCATTCTATGAATTGCAGAATCCCCAACAGCAAATTCAGGCCTATGCCTTTGATGTG
GTCCTGGCCCTAGTTCCAAGAATGAATCTTGATGACCTTTTTGAGTAAAAGAATGATGTGGTGAAGACTGTACTTGAGGAGCTTGAAAAGGTAACTCAAG
TGCCTGTTTTTACTGAGTCCAGCTCTCTAGGATTAAGTTGATCGGCTGATTATGCAAACTCCAGTAAGGCAAATCATTGTTTTTCCTTGTTTGCATGTAT
TGCATTCTGCCATGGTCCCAGGGACGAAGCTAGCATCAAAACAAGGGGGTGCACTACCATTGAAAATCTAAAAAATTTCAGTACAACACTGTACATTCTA
GTGTTTTTAAGTGAGAAATTAGAAATTTGGGGGGTTCATGTGCACCCCCCAAGCATAGTGTAGCTTCGGCACTGCATGGTCCATCATTCCATGTACCGTT
GTCATCCTGTCAGGATTCTAAATCTAGTCAAACACATTTTTGTGTTAGCTGAAGTATTATTCTCTCTTTTTTTTTCTCTTGTGCACCTATTTGCATGTTG
AAAGAGTTGGAATCTTTGTTTGGTATACATTTTAAGCATGTTATTTCGTTACCCACAATTCATACTATTCTTCCAAGATTGGTTTACATGCTTATGTGGA
ATTCTAGTCCCAGAATACTGTTTGATGGAACTTGGCTGTATCAAAAGGAAATCTGGCATTGGGCTGTCTGCATCGCTTATCTTTCGTTGGAAACTTACGT
GCTTACCAAATTTTAAACTCTGTGATTGCTTCTTCCTCAAGTGTTGGATATTCCATTCATGATAACCAATGCTCTCTCTGTTCGTTCTAAGTTCCATTCC
TAATGTGTAGTTTTGTCCTCAAACATTTTTTTATCTTAGTACTTGTTAGTGATAAGCAGTTTATTATTTGTACCGTTATATATTATATGCCATCTTTGTA
AAAAAAGACTGTTCTGTAGTCTATACATCGAACATATTCTTATGGTTGATATCATCCCTGATACTTCTGTACGCAGAGCAATGAATGACATAAATGCAGG
TATTATTCCCTTTCAAGTATATATGGTACTTCTTTCAGTCTGTGCAACCTGCATGATGTTTATTAGTCTATTTAATGTTGTAATGTTTTCTGAAGTAATA
ATCTGTCAGACTTCTTAATTGATGATTATAAGCTCTCTCTCTCTCTCTCTTCTACTTATGCTTCGTTTGCTTTGTTTTCCGATGCTTGTAGTGTTTGGAG
TAGCTGCTGTGAAGCTAGCCCACAACGTGGGTAAGGTTGTCTGTTTGGGGGGTGGGTGTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGTGTTTGG
GGGGGGGGGGGGGGGTTCTGGCTCTGCATAGCACATTTTAGAACCATTGTCAAGTATGTAGCCTACTGCAACTTGCATAGGACCAAAGGGTGATGTTTCT
GTGTAGAGAAGTTAGATGGCGATGAGTCAATGACTTGAATTAGAAATGCTCTAGGTGAAAGGGAAAGGAACAGATCTAGAACTACAATTGGAATTAGGCC
AATCAAGTACAGACCACTGAAACTGAAGACTTGAGGGGCTAATCTTTGCTAATTAATTATTCAGTCTTAGAATCATGGCTAGGATCATATATAACCTAAC
TAATTAATCTGAACTAGAAAACAAGCTGAACTAACTATTCTTAGGTAGCTAGTTTGCTTTTGCCAACTCTGGACGCTTGTGCGGTTTCTCCTGTTGTCCT
GCATGATGCTAGACTATTGATCATTGCTGATTGCTCATACAGTCGCACTGGTATATTGCTGTAGTAGACCACATATATATTATAATGTTTCATGTTCAGT
TACCTTTCATGTTATCTCCATGTGTGCTCATAACTAGTTAACTCCTGTCACAGCCCAAAGTCTTCAGCTTGCAAGTGTCTACAAAGGGGAAGCAGAAAAG
ATTCTTCTGGTGAAGAAATCAGAAGCAGAGGCAAAAATACCTTTCTGGTGATGGCATTGCTAAACAGAGGCAGGCTGATGGCCTGAGACAGTACCACAGC
AAAAGAAGTCATGGACCTAATCATGGTCACGCAGTACTTTGACACCATAAAAGAACTTGGGGATGGCTCGAAGAACACAACGGTGTTCATACCTCAAGGC
CCAGGCCATGTCAAGGATATCAGCGAGCAAATCCGGAATGGTATGATGGAAGCGTCAAGCAACAATGTGTAAATTGTAGCGATTCACAGAACAAGGTTGG
GGATGGTTCAGATGGGAGGAGCCTGTTGTTTATAATGAATATATTACCTTTTGTTTATAGCCTGTTGTCAAGCAACACTAGCACCTTTTGTTTGCACACC
TACCTGGATGATAGAATATGTAGTTTTGGAATAACAAATAATGTTTGGAAGGTATAAAAGGAACAGGATATATATTAAGTTAAGGAAACTGCATCGATTT
ATACACATTAAAAGCCTGTGCTTGATTATTTTGAGCATACGCTTCTTCGGTAAAGAGGAATCAAACGATTCAAGTGGAAGTATCAATAAGATTGGCAAAA
TTTCTCTAAACATTAAAGTATCAATAAGATTGGCACCTATGTACGTGCAGGAATCATCCAATACGGGCGGCACCATGTACCATCAGCCGATTCAGCAACG
CCTTTGAAAGGATCCCTC